miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26083 3' -59.5 NC_005342.2 + 2376 0.81 0.0502
Target:  5'- cCGGCGGuCGC-CUGGUCGCCGUaCAGCGg -3'
miRNA:   3'- -GCCGCC-GCGcGGCUAGCGGUA-GUUGC- -5'
26083 3' -59.5 NC_005342.2 + 26280 0.72 0.203608
Target:  5'- -uGUGGCGCGCaccgCGCCGUCGAUGc -3'
miRNA:   3'- gcCGCCGCGCGgcuaGCGGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 32006 0.72 0.208951
Target:  5'- uCGGCGGCGaUGUCGA-CGUgCGUCAGCa -3'
miRNA:   3'- -GCCGCCGC-GCGGCUaGCG-GUAGUUGc -5'
26083 3' -59.5 NC_005342.2 + 1231 0.66 0.498928
Target:  5'- aCGGCaugacgugcuccuuGGCGCGCCGccuggcgcgcguugcGUuaCGCgAUCGGCGu -3'
miRNA:   3'- -GCCG--------------CCGCGCGGC---------------UA--GCGgUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 47694 0.76 0.101221
Target:  5'- uCGGCaagcugcucGGCGCGCUGGUCGUcggcguCAUCGGCGg -3'
miRNA:   3'- -GCCG---------CCGCGCGGCUAGCG------GUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 29575 0.75 0.133093
Target:  5'- gCGGCGaaGCGCGCgCGGUaGUCGUCGGCGa -3'
miRNA:   3'- -GCCGC--CGCGCG-GCUAgCGGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 19723 0.74 0.148266
Target:  5'- uGGUGGCgugcaagacgGCGCCGc-UGCCGUCAACGa -3'
miRNA:   3'- gCCGCCG----------CGCGGCuaGCGGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 2670 0.73 0.160662
Target:  5'- cCGGCGGCG-GCCGAcaggccgaGCuCGUCGGCGa -3'
miRNA:   3'- -GCCGCCGCgCGGCUag------CG-GUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 20728 0.73 0.178641
Target:  5'- aCGGCGcGCGCGCUGccggacAUCGCCGacgCGGCu -3'
miRNA:   3'- -GCCGC-CGCGCGGC------UAGCGGUa--GUUGc -5'
26083 3' -59.5 NC_005342.2 + 15488 0.72 0.203608
Target:  5'- cCGGCGGCGCGUCaagCGCgauGUUAGCGg -3'
miRNA:   3'- -GCCGCCGCGCGGcuaGCGg--UAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 46414 0.73 0.182925
Target:  5'- uGGCGGCGCgcuacaaaaagcuGCCGGUCGaCCAguUC-ACGa -3'
miRNA:   3'- gCCGCCGCG-------------CGGCUAGC-GGU--AGuUGC- -5'
26083 3' -59.5 NC_005342.2 + 40560 0.73 0.173985
Target:  5'- aGGC-GCGCGCCuucuGGUCGCCggCGAUGg -3'
miRNA:   3'- gCCGcCGCGCGG----CUAGCGGuaGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 19625 0.79 0.062957
Target:  5'- gCGGCGaGCGCgGCCGAcgcUgGCCGUCAACa -3'
miRNA:   3'- -GCCGC-CGCG-CGGCU---AgCGGUAGUUGc -5'
26083 3' -59.5 NC_005342.2 + 15257 0.72 0.192772
Target:  5'- gCGGCGGCGCGgucagcaucagcaCCGGgcgcUUGCCGUCGAg- -3'
miRNA:   3'- -GCCGCCGCGC-------------GGCU----AGCGGUAGUUgc -5'
26083 3' -59.5 NC_005342.2 + 4640 0.79 0.063671
Target:  5'- aGGcCGGCGCGCgGGUCuuucuucaggaucguGCCAUCGGCGa -3'
miRNA:   3'- gCC-GCCGCGCGgCUAG---------------CGGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 20440 0.73 0.164998
Target:  5'- uCGGCGGCgcgaagccuGCGCCGGUCGUgAcgCAGCc -3'
miRNA:   3'- -GCCGCCG---------CGCGGCUAGCGgUa-GUUGc -5'
26083 3' -59.5 NC_005342.2 + 13396 0.72 0.203608
Target:  5'- gGGUGcGCGCgGCCGAaCGCCugAUCAugGa -3'
miRNA:   3'- gCCGC-CGCG-CGGCUaGCGG--UAGUugC- -5'
26083 3' -59.5 NC_005342.2 + 9727 0.72 0.208951
Target:  5'- cCGGauGCGCGCC---CGUCGUCAACGa -3'
miRNA:   3'- -GCCgcCGCGCGGcuaGCGGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 44106 0.77 0.093156
Target:  5'- uCGGCGGCGCG-CGcUCGCUA-CAACGg -3'
miRNA:   3'- -GCCGCCGCGCgGCuAGCGGUaGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 9611 0.74 0.136746
Target:  5'- cCGGCGGCGCGCCug-CGCC--CGGCu -3'
miRNA:   3'- -GCCGCCGCGCGGcuaGCGGuaGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.