miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26083 5' -57.2 NC_005342.2 + 37500 0.66 0.597493
Target:  5'- uGCCGUUcagguaGUAGCGAAUGuCCUGCuugGCg- -3'
miRNA:   3'- -UGGCAG------CAUCGCUUACuGGGCG---CGgu -5'
26083 5' -57.2 NC_005342.2 + 41298 0.66 0.597493
Target:  5'- cCCGcaCGUgaAGCGGcgGAUgCGCGCCu -3'
miRNA:   3'- uGGCa-GCA--UCGCUuaCUGgGCGCGGu -5'
26083 5' -57.2 NC_005342.2 + 36167 0.66 0.597493
Target:  5'- cGCCGUCGc-GCuGAUGGCC-GCGUCGu -3'
miRNA:   3'- -UGGCAGCauCGcUUACUGGgCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 16982 0.66 0.586602
Target:  5'- cGCCGUCGccGCGcucGACUCGUGCa- -3'
miRNA:   3'- -UGGCAGCauCGCuuaCUGGGCGCGgu -5'
26083 5' -57.2 NC_005342.2 + 47791 0.66 0.582256
Target:  5'- aGCCGgCG-GGCGcacgggcagugGACUCGCGCCAg -3'
miRNA:   3'- -UGGCaGCaUCGCuua--------CUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 8483 0.66 0.564943
Target:  5'- uCCG-CGUucGCGAAgaagucGCCCGUGCCGa -3'
miRNA:   3'- uGGCaGCAu-CGCUUac----UGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 36619 0.66 0.564943
Target:  5'- aGCuCGUCG-AGCGcggcaaGGUGACgacgaaCCGCGCCGc -3'
miRNA:   3'- -UG-GCAGCaUCGC------UUACUG------GGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 40708 0.66 0.564943
Target:  5'- cGCCGUCGc-GCaGAUGAUCgGCGUCu -3'
miRNA:   3'- -UGGCAGCauCGcUUACUGGgCGCGGu -5'
26083 5' -57.2 NC_005342.2 + 14371 0.66 0.55419
Target:  5'- cGCgGUCGccaugaaGGCGAGUuuCUCGCGCCGc -3'
miRNA:   3'- -UGgCAGCa------UCGCUUAcuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 32760 0.66 0.55419
Target:  5'- cGCCGcacgugCGUAGCGGucGGCCacgaGCGCUg -3'
miRNA:   3'- -UGGCa-----GCAUCGCUuaCUGGg---CGCGGu -5'
26083 5' -57.2 NC_005342.2 + 15951 0.66 0.543498
Target:  5'- cGCaCGUCGacaucGCcgc-GACCCGCGCCAu -3'
miRNA:   3'- -UG-GCAGCau---CGcuuaCUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 21011 0.67 0.532875
Target:  5'- aGCCGUCacgGGCGAcgaaGUGG-CCGCGCa- -3'
miRNA:   3'- -UGGCAGca-UCGCU----UACUgGGCGCGgu -5'
26083 5' -57.2 NC_005342.2 + 26527 0.67 0.532875
Target:  5'- cGCCGacaggUGcGGCGAAcUGcacggaGCCCGCGCCGg -3'
miRNA:   3'- -UGGCa----GCaUCGCUU-AC------UGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 25627 0.67 0.532875
Target:  5'- uCC-UCGUGGCGAAguUGugCCaCGCCu -3'
miRNA:   3'- uGGcAGCAUCGCUU--ACugGGcGCGGu -5'
26083 5' -57.2 NC_005342.2 + 8186 0.67 0.526537
Target:  5'- cGCCGUCGauuuugaugucuuGCGAGgcgUCCGCGCCGu -3'
miRNA:   3'- -UGGCAGCau-----------CGCUUacuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 39325 0.67 0.522327
Target:  5'- cACCGUCacgAGCaagccgGGCgCCGCGCCGa -3'
miRNA:   3'- -UGGCAGca-UCGcuua--CUG-GGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 3228 0.67 0.522327
Target:  5'- cGCgGUCG-AGCGGccgGACagCGCGCCGu -3'
miRNA:   3'- -UGgCAGCaUCGCUua-CUGg-GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 20439 0.67 0.511861
Target:  5'- uUCGgCGgcGCGAA--GCCUGCGCCGg -3'
miRNA:   3'- uGGCaGCauCGCUUacUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 11060 0.67 0.501483
Target:  5'- cGCgCGUCGUgAGCGGcGUGuCgCCGCGCUg -3'
miRNA:   3'- -UG-GCAGCA-UCGCU-UACuG-GGCGCGGu -5'
26083 5' -57.2 NC_005342.2 + 42944 0.67 0.491198
Target:  5'- uGCCGUgCGUu-CGcAUG-CCCGCGCCGc -3'
miRNA:   3'- -UGGCA-GCAucGCuUACuGGGCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.