miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26083 5' -57.2 NC_005342.2 + 18452 1.08 0.000636
Target:  5'- gACCGUCGUAGCGAAUGACCCGCGCCAg -3'
miRNA:   3'- -UGGCAGCAUCGCUUACUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 3845 0.78 0.110088
Target:  5'- aGCCGUUGUAGCGA---GCgCGCGCCGc -3'
miRNA:   3'- -UGGCAGCAUCGCUuacUGgGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 35926 0.76 0.149415
Target:  5'- aGCCuugGUCGUAGCGAAUGcCuuGCGUCGc -3'
miRNA:   3'- -UGG---CAGCAUCGCUUACuGggCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 27224 0.75 0.16218
Target:  5'- cGCCGUCGUgaucgcAGCGucUG-CCUGCGCCGa -3'
miRNA:   3'- -UGGCAGCA------UCGCuuACuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 30139 0.74 0.185644
Target:  5'- cGCgCGcCGUAGCGAcUGcCUCGCGCCAc -3'
miRNA:   3'- -UG-GCaGCAUCGCUuACuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 37083 0.74 0.195841
Target:  5'- cACUGUCGUcGGCGcaAGUGACUguCGCGCCGg -3'
miRNA:   3'- -UGGCAGCA-UCGC--UUACUGG--GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 26830 0.73 0.241627
Target:  5'- -gCGUCGUAGCGAGUG-CUguCGCGUCGc -3'
miRNA:   3'- ugGCAGCAUCGCUUACuGG--GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 45666 0.72 0.24794
Target:  5'- aGCuCGUCG-AGCGGAUGugUCGCGgCGa -3'
miRNA:   3'- -UG-GCAGCaUCGCUUACugGGCGCgGU- -5'
26083 5' -57.2 NC_005342.2 + 7674 0.72 0.260974
Target:  5'- -gCGUCGUAGCG-GUGAUCgGCGCgGa -3'
miRNA:   3'- ugGCAGCAUCGCuUACUGGgCGCGgU- -5'
26083 5' -57.2 NC_005342.2 + 33156 0.72 0.274561
Target:  5'- cGCCGUgGUcuGCGAAUGACCugcuCGCGCg- -3'
miRNA:   3'- -UGGCAgCAu-CGCUUACUGG----GCGCGgu -5'
26083 5' -57.2 NC_005342.2 + 33672 0.72 0.281564
Target:  5'- cACCGUgaugccCGUcGCGAGUGACCCGCuuGUCu -3'
miRNA:   3'- -UGGCA------GCAuCGCUUACUGGGCG--CGGu -5'
26083 5' -57.2 NC_005342.2 + 6497 0.71 0.288709
Target:  5'- cCCGgCGc-GCGAGUcGCCCGCGCCGa -3'
miRNA:   3'- uGGCaGCauCGCUUAcUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 12114 0.7 0.324191
Target:  5'- cGCCGUCGUGGuCGuAgccaguuuccucucGUGuCUCGCGCCGa -3'
miRNA:   3'- -UGGCAGCAUC-GC-U--------------UACuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 47124 0.7 0.35941
Target:  5'- cGCCaGUCGU--CGAAacACCCGCGCCGa -3'
miRNA:   3'- -UGG-CAGCAucGCUUacUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 35638 0.69 0.376678
Target:  5'- gACCGUCGcgaacGUGAAUGcgaacgucaACCCGCGCgAg -3'
miRNA:   3'- -UGGCAGCau---CGCUUAC---------UGGGCGCGgU- -5'
26083 5' -57.2 NC_005342.2 + 29531 0.69 0.38552
Target:  5'- gGCCGUUGaUGGCGAucGGCgCGcCGCCGg -3'
miRNA:   3'- -UGGCAGC-AUCGCUuaCUGgGC-GCGGU- -5'
26083 5' -57.2 NC_005342.2 + 2176 0.69 0.38552
Target:  5'- uGCCGUCGUAcGCGAucGUGuaguuguucGCCgcguucgcauaCGCGCCAa -3'
miRNA:   3'- -UGGCAGCAU-CGCU--UAC---------UGG-----------GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 8192 0.69 0.403609
Target:  5'- cGCUG-CGUGGCaGGAUGacgccgGCCCGCGCgAg -3'
miRNA:   3'- -UGGCaGCAUCG-CUUAC------UGGGCGCGgU- -5'
26083 5' -57.2 NC_005342.2 + 12345 0.69 0.403609
Target:  5'- -gCGcCGUAGCGccc-GCCCGCGCCc -3'
miRNA:   3'- ugGCaGCAUCGCuuacUGGGCGCGGu -5'
26083 5' -57.2 NC_005342.2 + 7961 0.69 0.422226
Target:  5'- gUCGUCGgcucuGCGGugAUGaACCCGCGaCCAg -3'
miRNA:   3'- uGGCAGCau---CGCU--UAC-UGGGCGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.