miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26083 5' -57.2 NC_005342.2 + 900 0.68 0.460955
Target:  5'- cGCCcUCGUAGCGu---GCgCCGCGCUAu -3'
miRNA:   3'- -UGGcAGCAUCGCuuacUG-GGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 2176 0.69 0.38552
Target:  5'- uGCCGUCGUAcGCGAucGUGuaguuguucGCCgcguucgcauaCGCGCCAa -3'
miRNA:   3'- -UGGCAGCAU-CGCU--UAC---------UGG-----------GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 3228 0.67 0.522327
Target:  5'- cGCgGUCG-AGCGGccgGACagCGCGCCGu -3'
miRNA:   3'- -UGgCAGCaUCGCUua-CUGg-GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 3845 0.78 0.110088
Target:  5'- aGCCGUUGUAGCGA---GCgCGCGCCGc -3'
miRNA:   3'- -UGGCAGCAUCGCUuacUGgGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 6497 0.71 0.288709
Target:  5'- cCCGgCGc-GCGAGUcGCCCGCGCCGa -3'
miRNA:   3'- uGGCaGCauCGCUUAcUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 7674 0.72 0.260974
Target:  5'- -gCGUCGUAGCG-GUGAUCgGCGCgGa -3'
miRNA:   3'- ugGCAGCAUCGCuUACUGGgCGCGgU- -5'
26083 5' -57.2 NC_005342.2 + 7961 0.69 0.422226
Target:  5'- gUCGUCGgcucuGCGGugAUGaACCCGCGaCCAg -3'
miRNA:   3'- uGGCAGCau---CGCU--UAC-UGGGCGC-GGU- -5'
26083 5' -57.2 NC_005342.2 + 8186 0.67 0.526537
Target:  5'- cGCCGUCGauuuugaugucuuGCGAGgcgUCCGCGCCGu -3'
miRNA:   3'- -UGGCAGCau-----------CGCUUacuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 8192 0.69 0.403609
Target:  5'- cGCUG-CGUGGCaGGAUGacgccgGCCCGCGCgAg -3'
miRNA:   3'- -UGGCaGCAUCG-CUUAC------UGGGCGCGgU- -5'
26083 5' -57.2 NC_005342.2 + 8483 0.66 0.564943
Target:  5'- uCCG-CGUucGCGAAgaagucGCCCGUGCCGa -3'
miRNA:   3'- uGGCaGCAu-CGCUUac----UGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 11060 0.67 0.501483
Target:  5'- cGCgCGUCGUgAGCGGcGUGuCgCCGCGCUg -3'
miRNA:   3'- -UG-GCAGCA-UCGCU-UACuG-GGCGCGGu -5'
26083 5' -57.2 NC_005342.2 + 12114 0.7 0.324191
Target:  5'- cGCCGUCGUGGuCGuAgccaguuuccucucGUGuCUCGCGCCGa -3'
miRNA:   3'- -UGGCAGCAUC-GC-U--------------UACuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 12345 0.69 0.403609
Target:  5'- -gCGcCGUAGCGccc-GCCCGCGCCc -3'
miRNA:   3'- ugGCaGCAUCGCuuacUGGGCGCGGu -5'
26083 5' -57.2 NC_005342.2 + 14371 0.66 0.55419
Target:  5'- cGCgGUCGccaugaaGGCGAGUuuCUCGCGCCGc -3'
miRNA:   3'- -UGgCAGCa------UCGCUUAcuGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 15951 0.66 0.543498
Target:  5'- cGCaCGUCGacaucGCcgc-GACCCGCGCCAu -3'
miRNA:   3'- -UG-GCAGCau---CGcuuaCUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 16982 0.66 0.586602
Target:  5'- cGCCGUCGccGCGcucGACUCGUGCa- -3'
miRNA:   3'- -UGGCAGCauCGCuuaCUGGGCGCGgu -5'
26083 5' -57.2 NC_005342.2 + 18384 0.68 0.440382
Target:  5'- uACCGcgcgcgcuUCGccGCGAAUGACCagucgaccggcggCGCGCCGa -3'
miRNA:   3'- -UGGC--------AGCauCGCUUACUGG-------------GCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 18452 1.08 0.000636
Target:  5'- gACCGUCGUAGCGAAUGACCCGCGCCAg -3'
miRNA:   3'- -UGGCAGCAUCGCUUACUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 20439 0.67 0.511861
Target:  5'- uUCGgCGgcGCGAA--GCCUGCGCCGg -3'
miRNA:   3'- uGGCaGCauCGCUUacUGGGCGCGGU- -5'
26083 5' -57.2 NC_005342.2 + 20524 0.68 0.44135
Target:  5'- cGCCGuUCGcUGGCGGccuguaacAUGG-CCGCGCCGc -3'
miRNA:   3'- -UGGC-AGC-AUCGCU--------UACUgGGCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.