miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26084 3' -58.9 NC_005342.2 + 23149 0.66 0.508996
Target:  5'- --cGUGCaGGUCGCGCAgcuacCGaACGUGc -3'
miRNA:   3'- caaCGCGcCCAGCGCGUa----GC-UGCGCa -5'
26084 3' -58.9 NC_005342.2 + 6620 0.66 0.508996
Target:  5'- --cGCGCucGGcagCGCGC-UCGGCGCGc -3'
miRNA:   3'- caaCGCGc-CCa--GCGCGuAGCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 37257 0.66 0.508996
Target:  5'- -gUGCGCuGcUCGUGCGUcagcucgcCGACGCGUu -3'
miRNA:   3'- caACGCGcCcAGCGCGUA--------GCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 11058 0.66 0.508996
Target:  5'- --gGCGCGcGUCGUGag-CGGCGUGUc -3'
miRNA:   3'- caaCGCGCcCAGCGCguaGCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 32970 0.66 0.508996
Target:  5'- aGUUuCGCGGcGUCG-GCGUCGGCG-GUc -3'
miRNA:   3'- -CAAcGCGCC-CAGCgCGUAGCUGCgCA- -5'
26084 3' -58.9 NC_005342.2 + 8878 0.66 0.49875
Target:  5'- cUUG-GCGaGGUUG-GCGUCGAUGCGc -3'
miRNA:   3'- cAACgCGC-CCAGCgCGUAGCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 10206 0.66 0.49875
Target:  5'- -cUGCGCGcGGUCuGCuuGUCGaAUGCGa -3'
miRNA:   3'- caACGCGC-CCAG-CGcgUAGC-UGCGCa -5'
26084 3' -58.9 NC_005342.2 + 4647 0.66 0.497731
Target:  5'- --cGCGCGGGucuuucuucaggaUCGUGCcAUCGGCGa-- -3'
miRNA:   3'- caaCGCGCCC-------------AGCGCG-UAGCUGCgca -5'
26084 3' -58.9 NC_005342.2 + 10212 0.66 0.496712
Target:  5'- cGggGCGCcagguaucgaacGGGUCgGCGCAcuggaagccgagCGACGCGg -3'
miRNA:   3'- -CaaCGCG------------CCCAG-CGCGUa-----------GCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 41696 0.66 0.488598
Target:  5'- --aGUGCGGGcgacCGCGCcaaggcuuccuGUCGguGCGCGUg -3'
miRNA:   3'- caaCGCGCCCa---GCGCG-----------UAGC--UGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 43142 0.66 0.475546
Target:  5'- --cGCuCGGGUcgggcugacggacgCGCGCAUCG-CGCGc -3'
miRNA:   3'- caaCGcGCCCA--------------GCGCGUAGCuGCGCa -5'
26084 3' -58.9 NC_005342.2 + 37135 0.66 0.46859
Target:  5'- uUUGCGCGGcGUgcaCGUGUAcugCGGCGUGa -3'
miRNA:   3'- cAACGCGCC-CA---GCGCGUa--GCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 26283 0.66 0.46859
Target:  5'- --gGCGCGcacCGCGcCGUCGAUGCGa -3'
miRNA:   3'- caaCGCGCccaGCGC-GUAGCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 1262 0.67 0.449012
Target:  5'- --gGCGCGcGUUGCGUuacgcgAUCGGCGUGa -3'
miRNA:   3'- caaCGCGCcCAGCGCG------UAGCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 47736 0.67 0.449012
Target:  5'- -gUGUGCGGcugUGCuaCAUCGGCGCGUu -3'
miRNA:   3'- caACGCGCCca-GCGc-GUAGCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 35608 0.67 0.439393
Target:  5'- cGggGCGCGGG-CGgGCGcuaCGGCGCc- -3'
miRNA:   3'- -CaaCGCGCCCaGCgCGUa--GCUGCGca -5'
26084 3' -58.9 NC_005342.2 + 36789 0.67 0.439393
Target:  5'- --cGCGCGGGUCGCGagaaGUgGAuuuucaacaCGCa- -3'
miRNA:   3'- caaCGCGCCCAGCGCg---UAgCU---------GCGca -5'
26084 3' -58.9 NC_005342.2 + 13818 0.67 0.429894
Target:  5'- --gGCGaCGGG-CGcCGCGUCGAgCGCa- -3'
miRNA:   3'- caaCGC-GCCCaGC-GCGUAGCU-GCGca -5'
26084 3' -58.9 NC_005342.2 + 8606 0.67 0.429894
Target:  5'- -aUGCGCGacGUCGaGC-UCGGCGCGg -3'
miRNA:   3'- caACGCGCc-CAGCgCGuAGCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 205 0.67 0.420516
Target:  5'- -gUGCGuCGGGUCGCcccacgccguGCcguUCGAUGUGg -3'
miRNA:   3'- caACGC-GCCCAGCG----------CGu--AGCUGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.