miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26084 3' -58.9 NC_005342.2 + 37226 0.67 0.402136
Target:  5'- gGUUGCGcCGGGcCGCGCGguaCGAuaCGCc- -3'
miRNA:   3'- -CAACGC-GCCCaGCGCGUa--GCU--GCGca -5'
26084 3' -58.9 NC_005342.2 + 9045 0.68 0.39314
Target:  5'- -aUGCGCGGGcCGUGCugcCGgugcaGCGCGc -3'
miRNA:   3'- caACGCGCCCaGCGCGua-GC-----UGCGCa -5'
26084 3' -58.9 NC_005342.2 + 21977 0.68 0.392248
Target:  5'- --cGCacuGCGGGcCGUuuucuuuGCGUCGGCGCGa -3'
miRNA:   3'- caaCG---CGCCCaGCG-------CGUAGCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 28707 0.68 0.384276
Target:  5'- -cUGCGCGGc-CGcCGgAUCGGCGUGUg -3'
miRNA:   3'- caACGCGCCcaGC-GCgUAGCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 23943 0.68 0.366948
Target:  5'- --aGUGCGGGUUGUGCccgcCGGCuGCGg -3'
miRNA:   3'- caaCGCGCCCAGCGCGua--GCUG-CGCa -5'
26084 3' -58.9 NC_005342.2 + 23718 0.68 0.366948
Target:  5'- --cGCGCGGGUUGCGUcggaaGUCGuaACGgGc -3'
miRNA:   3'- caaCGCGCCCAGCGCG-----UAGC--UGCgCa -5'
26084 3' -58.9 NC_005342.2 + 37125 0.68 0.366948
Target:  5'- --cGCGCGGcGUCaaGCGCGU-GACaGCGUa -3'
miRNA:   3'- caaCGCGCC-CAG--CGCGUAgCUG-CGCA- -5'
26084 3' -58.9 NC_005342.2 + 20976 0.68 0.358489
Target:  5'- --gGCGCGGGcgagugggUGCGUuUCGAgCGCGUg -3'
miRNA:   3'- caaCGCGCCCa-------GCGCGuAGCU-GCGCA- -5'
26084 3' -58.9 NC_005342.2 + 9364 0.68 0.358489
Target:  5'- --gGCGCGGGU-GCGCGgacgggCGGCGUu- -3'
miRNA:   3'- caaCGCGCCCAgCGCGUa-----GCUGCGca -5'
26084 3' -58.9 NC_005342.2 + 27498 0.68 0.358489
Target:  5'- aUUGCGUGcGGUUGauguaaGCgAUCGACGUGUc -3'
miRNA:   3'- cAACGCGC-CCAGCg-----CG-UAGCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 37451 0.68 0.350166
Target:  5'- -cUGcCGCGGGUgCGCGagAUCGACgaGCGUc -3'
miRNA:   3'- caAC-GCGCCCA-GCGCg-UAGCUG--CGCA- -5'
26084 3' -58.9 NC_005342.2 + 6673 0.68 0.350166
Target:  5'- --cGUGCGGG--GCGCAUUGGCGaCGa -3'
miRNA:   3'- caaCGCGCCCagCGCGUAGCUGC-GCa -5'
26084 3' -58.9 NC_005342.2 + 28604 0.69 0.341982
Target:  5'- -gUGcCGCacGGUCGCGC-UCGGCGCa- -3'
miRNA:   3'- caAC-GCGc-CCAGCGCGuAGCUGCGca -5'
26084 3' -58.9 NC_005342.2 + 17121 0.69 0.341982
Target:  5'- -aUGCGCGaGGaagucgUGCGCGUCGAUaugGCGg -3'
miRNA:   3'- caACGCGC-CCa-----GCGCGUAGCUG---CGCa -5'
26084 3' -58.9 NC_005342.2 + 8284 0.69 0.341982
Target:  5'- --cGCGCGGGgcUCGCGCccCGcuAUGCGUu -3'
miRNA:   3'- caaCGCGCCC--AGCGCGuaGC--UGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 17322 0.69 0.326032
Target:  5'- cGUUGCGaugaaGGcgagcGUCGaCGCGcUCGACGCGUu -3'
miRNA:   3'- -CAACGCg----CC-----CAGC-GCGU-AGCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 11294 0.69 0.318266
Target:  5'- uGUUGCaCuGGUCGCGCGcgaugaaggCGGCGCGg -3'
miRNA:   3'- -CAACGcGcCCAGCGCGUa--------GCUGCGCa -5'
26084 3' -58.9 NC_005342.2 + 8938 0.69 0.318266
Target:  5'- -gUGCGCGGGcuggaUCGUGCGgcCGuGCGCGg -3'
miRNA:   3'- caACGCGCCC-----AGCGCGUa-GC-UGCGCa -5'
26084 3' -58.9 NC_005342.2 + 22043 0.69 0.310641
Target:  5'- ---aCGCGGGcggacagaUCGUGCA-CGGCGCGUa -3'
miRNA:   3'- caacGCGCCC--------AGCGCGUaGCUGCGCA- -5'
26084 3' -58.9 NC_005342.2 + 734 0.69 0.310641
Target:  5'- --aGCGCGGcaGUCGC-CGcCGGCGCGUu -3'
miRNA:   3'- caaCGCGCC--CAGCGcGUaGCUGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.