miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26084 5' -54.2 NC_005342.2 + 29163 0.66 0.745304
Target:  5'- cCUGCGGCcgcgCGAUaaGCGCgguucagcgaUGGCGg -3'
miRNA:   3'- -GAUGCCGua--GCUAggCGCGaa--------ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 10719 0.66 0.745304
Target:  5'- -gGCGGCGuaUCGuaCCGCGCggcccGGCGc -3'
miRNA:   3'- gaUGCCGU--AGCuaGGCGCGaaa--CCGU- -5'
26084 5' -54.2 NC_005342.2 + 19525 0.66 0.73459
Target:  5'- uCUACGGCAUgcCGGaagUCGUGCUgcucgcgaucUGGCAg -3'
miRNA:   3'- -GAUGCCGUA--GCUa--GGCGCGAa---------ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 29117 0.66 0.73459
Target:  5'- -cACGGCAacugCGuacugCCGCGCg--GGCu -3'
miRNA:   3'- gaUGCCGUa---GCua---GGCGCGaaaCCGu -5'
26084 5' -54.2 NC_005342.2 + 28875 0.66 0.73459
Target:  5'- -gACGGUcacaCGggCCGCGCcgagUGGCGa -3'
miRNA:   3'- gaUGCCGua--GCuaGGCGCGaa--ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 20637 0.66 0.73459
Target:  5'- -cGCGaGCGUCGcaacggcgCUGCGCcagUGGCAg -3'
miRNA:   3'- gaUGC-CGUAGCua------GGCGCGaa-ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 8888 0.66 0.73459
Target:  5'- --uUGGCGUCGAUgCGCGacgcGGCu -3'
miRNA:   3'- gauGCCGUAGCUAgGCGCgaaaCCGu -5'
26084 5' -54.2 NC_005342.2 + 37602 0.66 0.723769
Target:  5'- gCUuCGGCcugcucgCGAUUCGCGCUcucGGCGa -3'
miRNA:   3'- -GAuGCCGua-----GCUAGGCGCGAaa-CCGU- -5'
26084 5' -54.2 NC_005342.2 + 47225 0.66 0.723769
Target:  5'- --cCGGCggCGAcugCCGCGCUgaacgaGGCGc -3'
miRNA:   3'- gauGCCGuaGCUa--GGCGCGAaa----CCGU- -5'
26084 5' -54.2 NC_005342.2 + 47117 0.66 0.723769
Target:  5'- -aACGGCGUCGucUCgGUGCcuaUGGCc -3'
miRNA:   3'- gaUGCCGUAGCu-AGgCGCGaa-ACCGu -5'
26084 5' -54.2 NC_005342.2 + 5563 0.66 0.723769
Target:  5'- --cCGGCGUggagaCGAUCgGCGCUguugcgGGCu -3'
miRNA:   3'- gauGCCGUA-----GCUAGgCGCGAaa----CCGu -5'
26084 5' -54.2 NC_005342.2 + 43865 0.66 0.712853
Target:  5'- cCUACGGCAaauUCGAcgaccugUCGCGCccgcucGGCAa -3'
miRNA:   3'- -GAUGCCGU---AGCUa------GGCGCGaaa---CCGU- -5'
26084 5' -54.2 NC_005342.2 + 28480 0.66 0.712853
Target:  5'- -aGCGccGCGUCGA-CCGCGCgggucgcGGCGg -3'
miRNA:   3'- gaUGC--CGUAGCUaGGCGCGaaa----CCGU- -5'
26084 5' -54.2 NC_005342.2 + 9582 0.66 0.712853
Target:  5'- -cGCGGCAUCGGccggUUGCGCaccGGCu -3'
miRNA:   3'- gaUGCCGUAGCUa---GGCGCGaaaCCGu -5'
26084 5' -54.2 NC_005342.2 + 12964 0.66 0.690782
Target:  5'- -gGCGcGCAUCGcaaaucgacGUUCGCGCcg-GGCAu -3'
miRNA:   3'- gaUGC-CGUAGC---------UAGGCGCGaaaCCGU- -5'
26084 5' -54.2 NC_005342.2 + 663 0.67 0.679653
Target:  5'- gUACGGCcguuUCGAcUUGUGCgUUGGCGa -3'
miRNA:   3'- gAUGCCGu---AGCUaGGCGCGaAACCGU- -5'
26084 5' -54.2 NC_005342.2 + 22024 0.67 0.657263
Target:  5'- --cCGGCAUCGAcgCCGCGC----GCAa -3'
miRNA:   3'- gauGCCGUAGCUa-GGCGCGaaacCGU- -5'
26084 5' -54.2 NC_005342.2 + 17827 0.67 0.630275
Target:  5'- gCUACGGCGcgcgaauUCGGUCCGgCGCcggucgcuucgacgUUcGGCAu -3'
miRNA:   3'- -GAUGCCGU-------AGCUAGGC-GCG--------------AAaCCGU- -5'
26084 5' -54.2 NC_005342.2 + 22859 0.68 0.601053
Target:  5'- -cGCGGCccggCGAUCgGCGCgaucguacUGGCGc -3'
miRNA:   3'- gaUGCCGua--GCUAGgCGCGaa------ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 20225 0.68 0.601053
Target:  5'- -gGCGGCgAUCGA-CCGCGac-UGGCc -3'
miRNA:   3'- gaUGCCG-UAGCUaGGCGCgaaACCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.