miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26084 5' -54.2 NC_005342.2 + 663 0.67 0.679653
Target:  5'- gUACGGCcguuUCGAcUUGUGCgUUGGCGa -3'
miRNA:   3'- gAUGCCGu---AGCUaGGCGCGaAACCGU- -5'
26084 5' -54.2 NC_005342.2 + 899 0.73 0.348002
Target:  5'- gUGCGGCGUU----UGCGCUUUGGCGg -3'
miRNA:   3'- gAUGCCGUAGcuagGCGCGAAACCGU- -5'
26084 5' -54.2 NC_005342.2 + 5563 0.66 0.723769
Target:  5'- --cCGGCGUggagaCGAUCgGCGCUguugcgGGCu -3'
miRNA:   3'- gauGCCGUA-----GCUAGgCGCGAaa----CCGu -5'
26084 5' -54.2 NC_005342.2 + 7473 0.68 0.589854
Target:  5'- cCUGCGGCca-GGUCUGCGCgaUGcGCu -3'
miRNA:   3'- -GAUGCCGuagCUAGGCGCGaaAC-CGu -5'
26084 5' -54.2 NC_005342.2 + 8170 0.69 0.567577
Target:  5'- -aGCGGCGUCGAgacguUuuGaaCGCUgcgUGGCAg -3'
miRNA:   3'- gaUGCCGUAGCU-----AggC--GCGAa--ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 8848 0.7 0.470906
Target:  5'- gCUGCGGCG-CGGUuagCCGCGCaccuugaucUUGGCGa -3'
miRNA:   3'- -GAUGCCGUaGCUA---GGCGCGa--------AACCGU- -5'
26084 5' -54.2 NC_005342.2 + 8888 0.66 0.73459
Target:  5'- --uUGGCGUCGAUgCGCGacgcGGCu -3'
miRNA:   3'- gauGCCGUAGCUAgGCGCgaaaCCGu -5'
26084 5' -54.2 NC_005342.2 + 9582 0.66 0.712853
Target:  5'- -cGCGGCAUCGGccggUUGCGCaccGGCu -3'
miRNA:   3'- gaUGCCGUAGCUa---GGCGCGaaaCCGu -5'
26084 5' -54.2 NC_005342.2 + 10719 0.66 0.745304
Target:  5'- -gGCGGCGuaUCGuaCCGCGCggcccGGCGc -3'
miRNA:   3'- gaUGCCGU--AGCuaGGCGCGaaa--CCGU- -5'
26084 5' -54.2 NC_005342.2 + 10753 0.68 0.589854
Target:  5'- -gGCGGCccauugcUCGAUCUGCauGCgUUUGGCGa -3'
miRNA:   3'- gaUGCCGu------AGCUAGGCG--CG-AAACCGU- -5'
26084 5' -54.2 NC_005342.2 + 12964 0.66 0.690782
Target:  5'- -gGCGcGCAUCGcaaaucgacGUUCGCGCcg-GGCAu -3'
miRNA:   3'- gaUGC-CGUAGC---------UAGGCGCGaaaCCGU- -5'
26084 5' -54.2 NC_005342.2 + 15429 0.75 0.256437
Target:  5'- -aACGGgGUCGAUCgaCGCGC-UUGGCGu -3'
miRNA:   3'- gaUGCCgUAGCUAG--GCGCGaAACCGU- -5'
26084 5' -54.2 NC_005342.2 + 15781 0.7 0.481266
Target:  5'- gCUGCGGC-UCGucgCgGCGCUgaagGGCGc -3'
miRNA:   3'- -GAUGCCGuAGCua-GgCGCGAaa--CCGU- -5'
26084 5' -54.2 NC_005342.2 + 17827 0.67 0.630275
Target:  5'- gCUACGGCGcgcgaauUCGGUCCGgCGCcggucgcuucgacgUUcGGCAu -3'
miRNA:   3'- -GAUGCCGU-------AGCUAGGC-GCG--------------AAaCCGU- -5'
26084 5' -54.2 NC_005342.2 + 18172 1.08 0.001131
Target:  5'- gCUACGGCAUCGAUCCGCGCUUUGGCAc -3'
miRNA:   3'- -GAUGCCGUAGCUAGGCGCGAAACCGU- -5'
26084 5' -54.2 NC_005342.2 + 18273 0.73 0.331241
Target:  5'- -gGCGGCAgcgCGG-CCGCGCUc-GGCAc -3'
miRNA:   3'- gaUGCCGUa--GCUaGGCGCGAaaCCGU- -5'
26084 5' -54.2 NC_005342.2 + 19525 0.66 0.73459
Target:  5'- uCUACGGCAUgcCGGaagUCGUGCUgcucgcgaucUGGCAg -3'
miRNA:   3'- -GAUGCCGUA--GCUa--GGCGCGAa---------ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 20225 0.68 0.601053
Target:  5'- -gGCGGCgAUCGA-CCGCGac-UGGCc -3'
miRNA:   3'- gaUGCCG-UAGCUaGGCGCgaaACCGu -5'
26084 5' -54.2 NC_005342.2 + 20637 0.66 0.73459
Target:  5'- -cGCGaGCGUCGcaacggcgCUGCGCcagUGGCAg -3'
miRNA:   3'- gaUGC-CGUAGCua------GGCGCGaa-ACCGU- -5'
26084 5' -54.2 NC_005342.2 + 22024 0.67 0.657263
Target:  5'- --cCGGCAUCGAcgCCGCGC----GCAa -3'
miRNA:   3'- gauGCCGUAGCUa-GGCGCGaaacCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.