miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26089 5' -52.3 NC_005342.2 + 30166 0.66 0.881249
Target:  5'- aCGUCuGUUucaccGUCGACGUCACGgcugcgccuacCUUGUCg -3'
miRNA:   3'- -GCAG-CAGc----UAGCUGCAGUGU-----------GAGCAG- -5'
26089 5' -52.3 NC_005342.2 + 22856 0.66 0.881249
Target:  5'- uGUCGcggcccggCGAUCGGCGcgaucguacUgGCGCUCGUg -3'
miRNA:   3'- gCAGCa-------GCUAGCUGC---------AgUGUGAGCAg -5'
26089 5' -52.3 NC_005342.2 + 13082 0.66 0.86543
Target:  5'- aGUUGUCGAUguaCGGCaUCGCgaGCUgCGUCa -3'
miRNA:   3'- gCAGCAGCUA---GCUGcAGUG--UGA-GCAG- -5'
26089 5' -52.3 NC_005342.2 + 37086 0.66 0.848619
Target:  5'- uGUCGUCGGcgcaagUGACuGUCGCGCcggCGUUc -3'
miRNA:   3'- gCAGCAGCUa-----GCUG-CAGUGUGa--GCAG- -5'
26089 5' -52.3 NC_005342.2 + 30619 0.67 0.839862
Target:  5'- aCG-CGUCGAgCG-CGUCgACGCUCGcCu -3'
miRNA:   3'- -GCaGCAGCUaGCuGCAG-UGUGAGCaG- -5'
26089 5' -52.3 NC_005342.2 + 31649 0.67 0.830881
Target:  5'- --aCGUCGAUCGACGacgggcgaCGCACcUUGUUg -3'
miRNA:   3'- gcaGCAGCUAGCUGCa-------GUGUG-AGCAG- -5'
26089 5' -52.3 NC_005342.2 + 2454 0.67 0.821687
Target:  5'- gCGUUGUucgugaCGAUCGACGcCGC-CUCGa- -3'
miRNA:   3'- -GCAGCA------GCUAGCUGCaGUGuGAGCag -5'
26089 5' -52.3 NC_005342.2 + 45479 0.67 0.802698
Target:  5'- aCGUCGcgcccgaccUCGAggCGGCGUCGa--UCGUCa -3'
miRNA:   3'- -GCAGC---------AGCUa-GCUGCAGUgugAGCAG- -5'
26089 5' -52.3 NC_005342.2 + 26622 0.67 0.802698
Target:  5'- gCGgCGUUGAUCGuuGUCGCAC-CGcCg -3'
miRNA:   3'- -GCaGCAGCUAGCugCAGUGUGaGCaG- -5'
26089 5' -52.3 NC_005342.2 + 40710 0.68 0.78298
Target:  5'- cCGUCGcgcagaUGAUCGGCGUCuaa-UCGUCg -3'
miRNA:   3'- -GCAGCa-----GCUAGCUGCAGugugAGCAG- -5'
26089 5' -52.3 NC_005342.2 + 5169 0.68 0.78298
Target:  5'- gCGUC-UCGAUgugCGGCGUCACGuucggCGUCg -3'
miRNA:   3'- -GCAGcAGCUA---GCUGCAGUGUga---GCAG- -5'
26089 5' -52.3 NC_005342.2 + 28003 0.68 0.778957
Target:  5'- aGUCGggcaaagcacUCGA-CGGCGgcucgccgcccggCGCGCUCGUCg -3'
miRNA:   3'- gCAGC----------AGCUaGCUGCa------------GUGUGAGCAG- -5'
26089 5' -52.3 NC_005342.2 + 16030 0.68 0.772875
Target:  5'- --aCGcUCGG-CGACGugcucaUCGCGCUCGUCg -3'
miRNA:   3'- gcaGC-AGCUaGCUGC------AGUGUGAGCAG- -5'
26089 5' -52.3 NC_005342.2 + 24592 0.68 0.772875
Target:  5'- -cUCGcCGGUCGGguUCGCGCUCGUa -3'
miRNA:   3'- gcAGCaGCUAGCUgcAGUGUGAGCAg -5'
26089 5' -52.3 NC_005342.2 + 9094 0.69 0.741717
Target:  5'- uGUCGUCGAgaucggugaUCGGCaagccgaugccGUCGCGCaUGUCa -3'
miRNA:   3'- gCAGCAGCU---------AGCUG-----------CAGUGUGaGCAG- -5'
26089 5' -52.3 NC_005342.2 + 25768 0.69 0.741717
Target:  5'- --aCGUUGGUCGugGUCAUGCgcgCGaUCu -3'
miRNA:   3'- gcaGCAGCUAGCugCAGUGUGa--GC-AG- -5'
26089 5' -52.3 NC_005342.2 + 39348 0.69 0.731089
Target:  5'- cCG-CGcCGAgcUCGACGUCGCGCaUCGg- -3'
miRNA:   3'- -GCaGCaGCU--AGCUGCAGUGUG-AGCag -5'
26089 5' -52.3 NC_005342.2 + 14939 0.69 0.709541
Target:  5'- gCGUCGUCGAUgauacCGACGUCGa--UCGa- -3'
miRNA:   3'- -GCAGCAGCUA-----GCUGCAGUgugAGCag -5'
26089 5' -52.3 NC_005342.2 + 45016 0.69 0.698645
Target:  5'- --cCGUUGAcgGGCGUCACGCUCG-Cg -3'
miRNA:   3'- gcaGCAGCUagCUGCAGUGUGAGCaG- -5'
26089 5' -52.3 NC_005342.2 + 5530 0.7 0.643401
Target:  5'- uGUCGgucaGAUCGaACGcCGCccGCUCGUCg -3'
miRNA:   3'- gCAGCag--CUAGC-UGCaGUG--UGAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.