miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26090 3' -58 NC_005342.2 + 44209 0.66 0.585362
Target:  5'- gGCCGaUCA--GAACGCcacGUCGACGCUGu -3'
miRNA:   3'- -CGGC-AGUgaCUUGCG---CGGCUGCGGCu -5'
26090 3' -58 NC_005342.2 + 182 0.66 0.585362
Target:  5'- cGCCcaaCACgccaGAGCGCGCgGgcaagccagaacGCGCCGAu -3'
miRNA:   3'- -CGGca-GUGa---CUUGCGCGgC------------UGCGGCU- -5'
26090 3' -58 NC_005342.2 + 32698 0.66 0.585362
Target:  5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3'
miRNA:   3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5'
26090 3' -58 NC_005342.2 + 3766 0.66 0.585362
Target:  5'- gGCCuUCGCgaucuGCGCaGCgGACGCUGGa -3'
miRNA:   3'- -CGGcAGUGacu--UGCG-CGgCUGCGGCU- -5'
26090 3' -58 NC_005342.2 + 30621 0.66 0.585362
Target:  5'- -gCGUC---GAGCGCGUCGACGCUc- -3'
miRNA:   3'- cgGCAGugaCUUGCGCGGCUGCGGcu -5'
26090 3' -58 NC_005342.2 + 8186 0.66 0.584292
Target:  5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3'
miRNA:   3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5'
26090 3' -58 NC_005342.2 + 39510 0.66 0.582153
Target:  5'- cGCCGUCGCgagGuACGaaaauccugugggaCGUgGugGCCGGg -3'
miRNA:   3'- -CGGCAGUGa--CuUGC--------------GCGgCugCGGCU- -5'
26090 3' -58 NC_005342.2 + 17409 0.66 0.574679
Target:  5'- gGCCacgacgCGCUGAcgaucaaaACGuCGCCcgGGCGCCGGa -3'
miRNA:   3'- -CGGca----GUGACU--------UGC-GCGG--CUGCGGCU- -5'
26090 3' -58 NC_005342.2 + 36535 0.66 0.574679
Target:  5'- uGCCGUCGagu-GCGCGCUacggccauCGCCGGc -3'
miRNA:   3'- -CGGCAGUgacuUGCGCGGcu------GCGGCU- -5'
26090 3' -58 NC_005342.2 + 1973 0.66 0.574679
Target:  5'- -gCGUCACgcc-CGCGCggaUGAUGCCGAc -3'
miRNA:   3'- cgGCAGUGacuuGCGCG---GCUGCGGCU- -5'
26090 3' -58 NC_005342.2 + 28876 0.66 0.574679
Target:  5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3'
miRNA:   3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5'
26090 3' -58 NC_005342.2 + 22008 0.66 0.574679
Target:  5'- cGCCGcgUACUGGcCGCcgGCauCGACGCCGc -3'
miRNA:   3'- -CGGCa-GUGACUuGCG--CG--GCUGCGGCu -5'
26090 3' -58 NC_005342.2 + 17463 0.66 0.574679
Target:  5'- cGUCGUCAU--GACGguCGCCG-CGCCGu -3'
miRNA:   3'- -CGGCAGUGacUUGC--GCGGCuGCGGCu -5'
26090 3' -58 NC_005342.2 + 37086 0.66 0.574679
Target:  5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3'
miRNA:   3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5'
26090 3' -58 NC_005342.2 + 18398 0.66 0.571483
Target:  5'- cGCCGcgaaUGAccagucgaccggcgGCGCGCCGAuCGCCa- -3'
miRNA:   3'- -CGGCagugACU--------------UGCGCGGCU-GCGGcu -5'
26090 3' -58 NC_005342.2 + 9692 0.66 0.564041
Target:  5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3'
miRNA:   3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5'
26090 3' -58 NC_005342.2 + 1610 0.66 0.564041
Target:  5'- cGUCGUCGgcggcguagccCUGAAUGCGCUG-CGCgGu -3'
miRNA:   3'- -CGGCAGU-----------GACUUGCGCGGCuGCGgCu -5'
26090 3' -58 NC_005342.2 + 10720 0.66 0.564041
Target:  5'- aCCGgaacgACUGAucuucACGUgGCCGugGCCGGc -3'
miRNA:   3'- cGGCag---UGACU-----UGCG-CGGCugCGGCU- -5'
26090 3' -58 NC_005342.2 + 20794 0.66 0.564041
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
26090 3' -58 NC_005342.2 + 45930 0.66 0.564041
Target:  5'- aCCG-CACUcuacCGCGCgGGCGUCGAu -3'
miRNA:   3'- cGGCaGUGAcuu-GCGCGgCUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.