miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26090 5' -52.4 NC_005342.2 + 29732 0.66 0.882437
Target:  5'- cCGUCgGCGUCGuagauuuccGGCGCGUauugCgaugCCGCg -3'
miRNA:   3'- -GCAG-CGCAGC---------CUGUGCAa---Gaaa-GGCG- -5'
26090 5' -52.4 NC_005342.2 + 40540 0.66 0.874701
Target:  5'- ---gGCGUCGGGC-CGUcucgugcagcUCUgggcgCCGCg -3'
miRNA:   3'- gcagCGCAGCCUGuGCA----------AGAaa---GGCG- -5'
26090 5' -52.4 NC_005342.2 + 25906 0.66 0.874701
Target:  5'- --aCGCGcCGuGCACGaUCUgUCCGCc -3'
miRNA:   3'- gcaGCGCaGCcUGUGCaAGAaAGGCG- -5'
26090 5' -52.4 NC_005342.2 + 32668 0.66 0.86671
Target:  5'- gCGUgCGCGUCGGGCAgcUUUgcgacUUCgGCa -3'
miRNA:   3'- -GCA-GCGCAGCCUGUgcAAGa----AAGgCG- -5'
26090 5' -52.4 NC_005342.2 + 709 0.66 0.844785
Target:  5'- gGUCGCGcCGGccggcgccucguucaGCGCGgcagUCg--CCGCc -3'
miRNA:   3'- gCAGCGCaGCC---------------UGUGCa---AGaaaGGCG- -5'
26090 5' -52.4 NC_005342.2 + 37002 0.66 0.841272
Target:  5'- aCGUCGaUGUCGaaggcGACGCGUUCcagucggUCGCg -3'
miRNA:   3'- -GCAGC-GCAGC-----CUGUGCAAGaaa----GGCG- -5'
26090 5' -52.4 NC_005342.2 + 38991 0.67 0.81382
Target:  5'- aCGcCGCGUCGGucgccgccgcGCACGg-----CCGCa -3'
miRNA:   3'- -GCaGCGCAGCC----------UGUGCaagaaaGGCG- -5'
26090 5' -52.4 NC_005342.2 + 3737 0.67 0.794528
Target:  5'- cCGUacaGCGUCGacGugGCGUUCUgaucggccUUCGCg -3'
miRNA:   3'- -GCAg--CGCAGC--CugUGCAAGAa-------AGGCG- -5'
26090 5' -52.4 NC_005342.2 + 1083 0.68 0.784618
Target:  5'- aCGUCGCaGUCGcGCGCGaagUCggugCCGUg -3'
miRNA:   3'- -GCAGCG-CAGCcUGUGCa--AGaaa-GGCG- -5'
26090 5' -52.4 NC_005342.2 + 15146 0.68 0.743475
Target:  5'- gCGgcagUGCGUaGGuCGCGUUCgcaaUCCGCa -3'
miRNA:   3'- -GCa---GCGCAgCCuGUGCAAGaa--AGGCG- -5'
26090 5' -52.4 NC_005342.2 + 39285 0.69 0.722167
Target:  5'- gCGUCaCgGUCGG-CACGUUCg--CCGUg -3'
miRNA:   3'- -GCAGcG-CAGCCuGUGCAAGaaaGGCG- -5'
26090 5' -52.4 NC_005342.2 + 28613 0.69 0.722167
Target:  5'- gGUCGCGcUCGGcgcaggccgGCGCGUaCUUgCCGUc -3'
miRNA:   3'- gCAGCGC-AGCC---------UGUGCAaGAAaGGCG- -5'
26090 5' -52.4 NC_005342.2 + 28327 0.7 0.656425
Target:  5'- aCGgccaGCGUCGGcCGCGcUCg--CCGCg -3'
miRNA:   3'- -GCag--CGCAGCCuGUGCaAGaaaGGCG- -5'
26090 5' -52.4 NC_005342.2 + 20567 0.7 0.645323
Target:  5'- uCGgCGCGUCGGGuCGCGccguggUgUUUCUGCa -3'
miRNA:   3'- -GCaGCGCAGCCU-GUGCa-----AgAAAGGCG- -5'
26090 5' -52.4 NC_005342.2 + 2507 0.7 0.634209
Target:  5'- -aUCGCGaUCGG-CACGUUCgcgCCGg -3'
miRNA:   3'- gcAGCGC-AGCCuGUGCAAGaaaGGCg -5'
26090 5' -52.4 NC_005342.2 + 33387 0.71 0.600893
Target:  5'- uGUC-CGaauUCGG-CGCGaUCUUUCCGCg -3'
miRNA:   3'- gCAGcGC---AGCCuGUGCaAGAAAGGCG- -5'
26090 5' -52.4 NC_005342.2 + 18145 0.71 0.600893
Target:  5'- gGUCGCGcaUC-GACGCGUUCcgUCgGCg -3'
miRNA:   3'- gCAGCGC--AGcCUGUGCAAGaaAGgCG- -5'
26090 5' -52.4 NC_005342.2 + 22758 0.71 0.567822
Target:  5'- gCGUCGuCGUauucaGGACuGCGUUCgaugcgCCGCa -3'
miRNA:   3'- -GCAGC-GCAg----CCUG-UGCAAGaaa---GGCG- -5'
26090 5' -52.4 NC_005342.2 + 22438 0.72 0.556893
Target:  5'- gCGgCGCGUaccaGGACGCGcUCgg-CCGCa -3'
miRNA:   3'- -GCaGCGCAg---CCUGUGCaAGaaaGGCG- -5'
26090 5' -52.4 NC_005342.2 + 37105 0.72 0.535227
Target:  5'- uGUCGCGcCGG---CGUUCUUcCCGCg -3'
miRNA:   3'- gCAGCGCaGCCuguGCAAGAAaGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.