miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
261 3' -55.7 AC_000008.1 + 3432 0.66 0.573639
Target:  5'- gAGCugAgGCCCGaucacuUggUGCUGG-CCUg -3'
miRNA:   3'- gUCGugUgUGGGC------AuuGCGACCuGGA- -5'
261 3' -55.7 AC_000008.1 + 10557 0.66 0.551259
Target:  5'- aGGCGCGCGCaauCGuUGACGCUcuaGACCg -3'
miRNA:   3'- gUCGUGUGUGg--GC-AUUGCGAc--CUGGa -5'
261 3' -55.7 AC_000008.1 + 28652 0.66 0.540167
Target:  5'- aGGCAUACgcgcuACCCGUagaaaaggGAUGCUGcGCCUa -3'
miRNA:   3'- gUCGUGUG-----UGGGCA--------UUGCGACcUGGA- -5'
261 3' -55.7 AC_000008.1 + 8523 0.66 0.540167
Target:  5'- aCGGUAC-CGCgCGgcgGGCGgUGGGCCg -3'
miRNA:   3'- -GUCGUGuGUGgGCa--UUGCgACCUGGa -5'
261 3' -55.7 AC_000008.1 + 19561 0.66 0.51822
Target:  5'- gCGGCgGC-CGCUCGUcGC-CUGGACCUg -3'
miRNA:   3'- -GUCG-UGuGUGGGCAuUGcGACCUGGA- -5'
261 3' -55.7 AC_000008.1 + 30418 0.67 0.507379
Target:  5'- gGGC-CACGCCgCGgagGgGCUGGACUa -3'
miRNA:   3'- gUCGuGUGUGG-GCau-UgCGACCUGGa -5'
261 3' -55.7 AC_000008.1 + 20703 0.67 0.485996
Target:  5'- uCAGCGCGCuucuccucaGCCCGUGugGCaaaGGugUc -3'
miRNA:   3'- -GUCGUGUG---------UGGGCAUugCGa--CCugGa -5'
261 3' -55.7 AC_000008.1 + 11485 0.68 0.444585
Target:  5'- aGGCugACAUCCGcUAugGCgagGGGCa- -3'
miRNA:   3'- gUCGugUGUGGGC-AUugCGa--CCUGga -5'
261 3' -55.7 AC_000008.1 + 6243 0.68 0.434543
Target:  5'- uGGCAaACgACCCGUAgaggGCGUUGGACa- -3'
miRNA:   3'- gUCGUgUG-UGGGCAU----UGCGACCUGga -5'
261 3' -55.7 AC_000008.1 + 13314 0.7 0.34189
Target:  5'- gGGUA-ACGCCCagcGUGGCGCUGGACa- -3'
miRNA:   3'- gUCGUgUGUGGG---CAUUGCGACCUGga -5'
261 3' -55.7 AC_000008.1 + 15330 0.7 0.325156
Target:  5'- aCAGCACcuuCACCCaGUAccGCaGCUGGuACCUu -3'
miRNA:   3'- -GUCGUGu--GUGGG-CAU--UG-CGACC-UGGA- -5'
261 3' -55.7 AC_000008.1 + 6655 0.71 0.293539
Target:  5'- aAGCGCGCGCUCGUAugGgUugagugggGGACCc -3'
miRNA:   3'- gUCGUGUGUGGGCAUugCgA--------CCUGGa -5'
261 3' -55.7 AC_000008.1 + 12129 0.75 0.1524
Target:  5'- gGGCGCugACCU---GCGCUGGGCCc -3'
miRNA:   3'- gUCGUGugUGGGcauUGCGACCUGGa -5'
261 3' -55.7 AC_000008.1 + 18506 1.08 0.000574
Target:  5'- cCAGCACACACCCGUAACGCUGGACCUg -3'
miRNA:   3'- -GUCGUGUGUGGGCAUUGCGACCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.