miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
261 5' -53.6 AC_000008.1 + 1528 0.66 0.694641
Target:  5'- -aACGCCCcaggccauaAGguGuAAACCUGUGaUUGCg -3'
miRNA:   3'- gcUGUGGG---------UCguC-UUUGGACAC-GACG- -5'
261 5' -53.6 AC_000008.1 + 12625 0.66 0.637213
Target:  5'- gCGGCAaCguGCAGAccAACCUGgaccgGCUGg -3'
miRNA:   3'- -GCUGUgGguCGUCU--UUGGACa----CGACg -5'
261 5' -53.6 AC_000008.1 + 31898 0.67 0.602598
Target:  5'- gGAaGCCUucagGGCAGAAACCUGcugGC-GCa -3'
miRNA:   3'- gCUgUGGG----UCGUCUUUGGACa--CGaCG- -5'
261 5' -53.6 AC_000008.1 + 33716 0.67 0.5911
Target:  5'- cCGcCGCCUGGCuuccuCCUGcUGCUGCu -3'
miRNA:   3'- -GCuGUGGGUCGucuuuGGAC-ACGACG- -5'
261 5' -53.6 AC_000008.1 + 22140 0.67 0.579642
Target:  5'- --uCGCCCAGCAGGcgcgGGCggGUGgUGCg -3'
miRNA:   3'- gcuGUGGGUCGUCU----UUGgaCACgACG- -5'
261 5' -53.6 AC_000008.1 + 13216 0.67 0.579642
Target:  5'- --cCACCCGGCGcuGAuaguguuCCaGUGCUGCa -3'
miRNA:   3'- gcuGUGGGUCGU--CUuu-----GGaCACGACG- -5'
261 5' -53.6 AC_000008.1 + 18080 0.68 0.556876
Target:  5'- uGGCGCCuuCAGCuGggGCucgCUGUGgaGCg -3'
miRNA:   3'- gCUGUGG--GUCGuCuuUG---GACACgaCG- -5'
261 5' -53.6 AC_000008.1 + 26170 0.69 0.501261
Target:  5'- uGGCACCCAaaaAGAAGCUgcaGCUGCc -3'
miRNA:   3'- gCUGUGGGUcg-UCUUUGGacaCGACG- -5'
261 5' -53.6 AC_000008.1 + 17567 0.7 0.427892
Target:  5'- gGugGCUCgcgaaggaGGCAGGAcCCUgGUGCUGCc -3'
miRNA:   3'- gCugUGGG--------UCGUCUUuGGA-CACGACG- -5'
261 5' -53.6 AC_000008.1 + 10442 0.7 0.417933
Target:  5'- gGACAUCCAGguGAuGCCg--GCgGCg -3'
miRNA:   3'- gCUGUGGGUCguCUuUGGacaCGaCG- -5'
261 5' -53.6 AC_000008.1 + 12987 0.71 0.38892
Target:  5'- uGACGCCCAaCucgcGCCUGuUGCUGCu -3'
miRNA:   3'- gCUGUGGGUcGucuuUGGAC-ACGACG- -5'
261 5' -53.6 AC_000008.1 + 17716 0.71 0.370327
Target:  5'- ----cCUCAGCAucuGGCCUGUGCUGCu -3'
miRNA:   3'- gcuguGGGUCGUcu-UUGGACACGACG- -5'
261 5' -53.6 AC_000008.1 + 30697 0.78 0.138773
Target:  5'- -aGCACUCGGUAGAAACCgaagGCUGCa -3'
miRNA:   3'- gcUGUGGGUCGUCUUUGGaca-CGACG- -5'
261 5' -53.6 AC_000008.1 + 8651 0.79 0.109718
Target:  5'- uCGGCGCCgCgcgcgGGCAGGAGCUgGUGCUGCg -3'
miRNA:   3'- -GCUGUGG-G-----UCGUCUUUGGaCACGACG- -5'
261 5' -53.6 AC_000008.1 + 18544 1.11 0.000525
Target:  5'- cCGACACCCAGCAGAAACCUGUGCUGCc -3'
miRNA:   3'- -GCUGUGGGUCGUCUUUGGACACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.