miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26101 3' -48.9 NC_005342.2 + 32966 0.66 0.970141
Target:  5'- gGCGAguUUCGcGGCGUCGG-CGUcGGCGGUc -3'
miRNA:   3'- -UGCU--AAGC-UUGUAGUUgGCA-CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 40421 0.66 0.970141
Target:  5'- cCGAUcgccgCGAuCGUC-ACCGgcGGCGGCa -3'
miRNA:   3'- uGCUAa----GCUuGUAGuUGGCa-CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 44351 0.66 0.970141
Target:  5'- gGCGuauUUCGAaauggacaugcGCAUCAACgCGc-GCGGCa -3'
miRNA:   3'- -UGCu--AAGCU-----------UGUAGUUG-GCacUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 25648 0.66 0.970141
Target:  5'- uCGGUcgaGAGCGUCuucccGGCCGUcgcgaaGGCGGCg -3'
miRNA:   3'- uGCUAag-CUUGUAG-----UUGGCA------CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 9010 0.66 0.970141
Target:  5'- uGCGG-UCGAGCAuugcacgcagcUCGGCCGacggGAUGcGCg -3'
miRNA:   3'- -UGCUaAGCUUGU-----------AGUUGGCa---CUGC-CG- -5'
26101 3' -48.9 NC_005342.2 + 14288 0.66 0.970141
Target:  5'- cGCGA--CGGGCAUCAcgguGCCGUc-UGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUAGU----UGGCAcuGCCG- -5'
26101 3' -48.9 NC_005342.2 + 26421 0.66 0.970141
Target:  5'- gGCGAUUCGGACGau-ACgCGUucGACGcGCc -3'
miRNA:   3'- -UGCUAAGCUUGUaguUG-GCA--CUGC-CG- -5'
26101 3' -48.9 NC_005342.2 + 31843 0.66 0.969813
Target:  5'- cGCGAUaagcgccagcacgUCGAACGcggCGACUGUcGGCaGGCc -3'
miRNA:   3'- -UGCUA-------------AGCUUGUa--GUUGGCA-CUG-CCG- -5'
26101 3' -48.9 NC_005342.2 + 44296 0.66 0.966736
Target:  5'- cCGAcgCGAugGUCGG-CGUGugGGa -3'
miRNA:   3'- uGCUaaGCUugUAGUUgGCACugCCg -5'
26101 3' -48.9 NC_005342.2 + 24817 0.66 0.966736
Target:  5'- cGCGAccugcacgUUGAaguagACcUCGACCGUcGGCGGCc -3'
miRNA:   3'- -UGCUa-------AGCU-----UGuAGUUGGCA-CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 11324 0.66 0.966736
Target:  5'- cGCGGUUCGu-CGUCAccuuGCCGcgcucGACGaGCu -3'
miRNA:   3'- -UGCUAAGCuuGUAGU----UGGCa----CUGC-CG- -5'
26101 3' -48.9 NC_005342.2 + 5678 0.66 0.966736
Target:  5'- aACGAcgCGGAUAa-GGCCGUgaugcccguuGACGGCg -3'
miRNA:   3'- -UGCUaaGCUUGUagUUGGCA----------CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 37389 0.66 0.963065
Target:  5'- cCGAccCGcuCGUCGGCCGgcccggcgcgUGGCGGCu -3'
miRNA:   3'- uGCUaaGCuuGUAGUUGGC----------ACUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 30972 0.66 0.959121
Target:  5'- cACGAgUCGAGCG-CGGC---GACGGCg -3'
miRNA:   3'- -UGCUaAGCUUGUaGUUGgcaCUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 18014 0.66 0.959121
Target:  5'- cGCGcg-CGGcGCGUCGAUCGaucaGGCGGCg -3'
miRNA:   3'- -UGCuaaGCU-UGUAGUUGGCa---CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 20736 0.66 0.959121
Target:  5'- cGCGcugcCGGACAUC-GCCGacGCGGCu -3'
miRNA:   3'- -UGCuaa-GCUUGUAGuUGGCacUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 15895 0.66 0.959121
Target:  5'- cACGcuaUCGGGCAgcgacccggCAGCCGUGcACGcGCu -3'
miRNA:   3'- -UGCua-AGCUUGUa--------GUUGGCAC-UGC-CG- -5'
26101 3' -48.9 NC_005342.2 + 41408 0.66 0.959121
Target:  5'- uCGAcgCGGGCggCAACUucgGGCGGCa -3'
miRNA:   3'- uGCUaaGCUUGuaGUUGGca-CUGCCG- -5'
26101 3' -48.9 NC_005342.2 + 47714 0.66 0.954896
Target:  5'- cUGGUcgUCGGcguCAUCGGCgGUGuGCGGCu -3'
miRNA:   3'- uGCUA--AGCUu--GUAGUUGgCAC-UGCCG- -5'
26101 3' -48.9 NC_005342.2 + 10087 0.66 0.954896
Target:  5'- cGCGAUUCGGAUcgaGGCCcagGuCGGCa -3'
miRNA:   3'- -UGCUAAGCUUGuagUUGGca-CuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.