miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26104 5' -60.3 NC_005342.2 + 20413 0.66 0.477365
Target:  5'- uGCGcagauUCGCcCCGGCGCGgCacuugcgauCGACACGUc -3'
miRNA:   3'- -CGC-----AGUGcGGCCGCGUgG---------GCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 37855 0.66 0.477365
Target:  5'- cGCGUUcgACGCCgacccGGC-CGCCgaucuUGGCACGCc -3'
miRNA:   3'- -CGCAG--UGCGG-----CCGcGUGG-----GCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 22159 0.66 0.477365
Target:  5'- uGCuUCuccuuguCGCCGGCgGCAgCCGGCG-GCg -3'
miRNA:   3'- -CGcAGu------GCGGCCG-CGUgGGCUGUgCG- -5'
26104 5' -60.3 NC_005342.2 + 29533 0.66 0.477365
Target:  5'- cCGUUgaugGCGaUCGGCGCGCCgccgguCGACugGUc -3'
miRNA:   3'- cGCAG----UGC-GGCCGCGUGG------GCUGugCG- -5'
26104 5' -60.3 NC_005342.2 + 32313 0.66 0.477365
Target:  5'- cCGUuugCGCGCC-GCGUAUUCG-CGCGCg -3'
miRNA:   3'- cGCA---GUGCGGcCGCGUGGGCuGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 20714 0.66 0.477365
Target:  5'- aCGagGCGUCGGCGCAggcaGACGCuGCg -3'
miRNA:   3'- cGCagUGCGGCCGCGUggg-CUGUG-CG- -5'
26104 5' -60.3 NC_005342.2 + 17004 0.66 0.477365
Target:  5'- gGCGcUGCGCC-GCGCGgCCGuCGCGa -3'
miRNA:   3'- -CGCaGUGCGGcCGCGUgGGCuGUGCg -5'
26104 5' -60.3 NC_005342.2 + 35799 0.66 0.477365
Target:  5'- aUGagACGCCGGaagaaGCgGCUCGGCGCGa -3'
miRNA:   3'- cGCagUGCGGCCg----CG-UGGGCUGUGCg -5'
26104 5' -60.3 NC_005342.2 + 6244 0.66 0.477365
Target:  5'- cGCG-CACcgacaggaaGCCuuGGCGCggucGCCCGcACugGCg -3'
miRNA:   3'- -CGCaGUG---------CGG--CCGCG----UGGGC-UGugCG- -5'
26104 5' -60.3 NC_005342.2 + 40347 0.66 0.477365
Target:  5'- uCGUCGCGCUguuccaGGUGCugCaGACGCa- -3'
miRNA:   3'- cGCAGUGCGG------CCGCGugGgCUGUGcg -5'
26104 5' -60.3 NC_005342.2 + 27325 0.66 0.476388
Target:  5'- cCGUUgcgACGCUcGCGUcgaauugGCCCGACuGCGCg -3'
miRNA:   3'- cGCAG---UGCGGcCGCG-------UGGGCUG-UGCG- -5'
26104 5' -60.3 NC_005342.2 + 18219 0.66 0.476388
Target:  5'- ---aCGCGCCGGaaaucuaCGaCGCCgaCGGCACGCu -3'
miRNA:   3'- cgcaGUGCGGCC-------GC-GUGG--GCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 12938 0.66 0.46764
Target:  5'- uUGUCGCGauagCGGuUGaucaGCUCGGCGCGCa -3'
miRNA:   3'- cGCAGUGCg---GCC-GCg---UGGGCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 17022 0.66 0.46764
Target:  5'- gGCGUCAUGCucgCGGUGUuCCaGcCGCGCc -3'
miRNA:   3'- -CGCAGUGCG---GCCGCGuGGgCuGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 5507 0.66 0.46764
Target:  5'- -gGUCAUgccgugGCCGGCGacgGCuuGGCGCGa -3'
miRNA:   3'- cgCAGUG------CGGCCGCg--UGggCUGUGCg -5'
26104 5' -60.3 NC_005342.2 + 27354 0.66 0.46764
Target:  5'- gGUGUCAUggugcgguaGCCGuGgaaGUGCCCGGCGCGa -3'
miRNA:   3'- -CGCAGUG---------CGGC-Cg--CGUGGGCUGUGCg -5'
26104 5' -60.3 NC_005342.2 + 31078 0.66 0.46764
Target:  5'- ---aCACGCgGGCGC-CCgGGCAC-Ca -3'
miRNA:   3'- cgcaGUGCGgCCGCGuGGgCUGUGcG- -5'
26104 5' -60.3 NC_005342.2 + 36151 0.66 0.46764
Target:  5'- gGCG-CAaGCUGGaGCGCgCCGuCGCGCu -3'
miRNA:   3'- -CGCaGUgCGGCCgCGUG-GGCuGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 34562 0.66 0.46764
Target:  5'- gGCGUUcgGCCGcGCGCACCCG-UAUu- -3'
miRNA:   3'- -CGCAGugCGGC-CGCGUGGGCuGUGcg -5'
26104 5' -60.3 NC_005342.2 + 20311 0.66 0.46764
Target:  5'- gGUGUCAauguuCGCCGaCGCuguGCCCGugaauGCugGCa -3'
miRNA:   3'- -CGCAGU-----GCGGCcGCG---UGGGC-----UGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.