miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26104 5' -60.3 NC_005342.2 + 88 0.69 0.298279
Target:  5'- -gGUCACcauGCCGGCGCGgU--GCGCGCg -3'
miRNA:   3'- cgCAGUG---CGGCCGCGUgGgcUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 465 0.69 0.312133
Target:  5'- -aGUCG-GCCGGgGUguacgagGCCaCGGCGCGCg -3'
miRNA:   3'- cgCAGUgCGGCCgCG-------UGG-GCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 602 0.7 0.257671
Target:  5'- aGCGg---GCCGGUGCugCCaGugACGCc -3'
miRNA:   3'- -CGCagugCGGCCGCGugGG-CugUGCG- -5'
26104 5' -60.3 NC_005342.2 + 709 0.77 0.08734
Target:  5'- -gGUCGCGCCGGCcgGCGCCuCGuucaGCGCg -3'
miRNA:   3'- cgCAGUGCGGCCG--CGUGG-GCug--UGCG- -5'
26104 5' -60.3 NC_005342.2 + 717 0.68 0.328008
Target:  5'- cCGUUGCGCCcuGCaGCACCUGAUAgGUg -3'
miRNA:   3'- cGCAGUGCGGc-CG-CGUGGGCUGUgCG- -5'
26104 5' -60.3 NC_005342.2 + 739 0.7 0.270682
Target:  5'- gGCaGUCGcCGCCGGCGCguuGCUaguCGAUGCGUc -3'
miRNA:   3'- -CG-CAGU-GCGGCCGCG---UGG---GCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 773 0.69 0.305511
Target:  5'- aGCGUgCcgguCGCCGGCGCAggaCCGAacaGCuGCa -3'
miRNA:   3'- -CGCA-Gu---GCGGCCGCGUg--GGCUg--UG-CG- -5'
26104 5' -60.3 NC_005342.2 + 820 0.72 0.193065
Target:  5'- cGCGUCGC-UCGGCGCGgguguuucgacgaCUGGCGCGCu -3'
miRNA:   3'- -CGCAGUGcGGCCGCGUg------------GGCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1078 0.68 0.359872
Target:  5'- gGCG-CACGCugcggCGGCGCGCCaaAUGCGUc -3'
miRNA:   3'- -CGCaGUGCG-----GCCGCGUGGgcUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1233 0.67 0.385151
Target:  5'- gGCaUgACGUgcuccuUGGCGCgccGCCUGGCGCGCg -3'
miRNA:   3'- -CGcAgUGCG------GCCGCG---UGGGCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1282 0.7 0.25136
Target:  5'- uGCuUguCGUCGGCGCGCgCCGccuuggcuGCGCGCg -3'
miRNA:   3'- -CGcAguGCGGCCGCGUG-GGC--------UGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1434 0.66 0.448503
Target:  5'- cGUGUUGCGCaCGGUaUAgaCGGCACGCu -3'
miRNA:   3'- -CGCAGUGCG-GCCGcGUggGCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1608 0.71 0.227382
Target:  5'- aGCGUCGuCGgCGGCGUAgcCCUGaAUGCGCu -3'
miRNA:   3'- -CGCAGU-GCgGCCGCGU--GGGC-UGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1822 0.74 0.138589
Target:  5'- aGCGUgCAgGCCGGCGUcgugcgguUCUGGCGCGCc -3'
miRNA:   3'- -CGCA-GUgCGGCCGCGu-------GGGCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 1972 0.72 0.18
Target:  5'- aGCGUCACGCCcGCGCGgaugaugCCGACGucacggcCGCg -3'
miRNA:   3'- -CGCAGUGCGGcCGCGUg------GGCUGU-------GCG- -5'
26104 5' -60.3 NC_005342.2 + 2011 0.68 0.325704
Target:  5'- uUGUCcuggaugacuucgaGCGCCuGGCGCugAUCCGGCGCGa -3'
miRNA:   3'- cGCAG--------------UGCGG-CCGCG--UGGGCUGUGCg -5'
26104 5' -60.3 NC_005342.2 + 2252 0.69 0.304781
Target:  5'- cGCGuUCGcCGUCGGCaggucguGCGCcguggCCGGCACGCc -3'
miRNA:   3'- -CGC-AGU-GCGGCCG-------CGUG-----GGCUGUGCG- -5'
26104 5' -60.3 NC_005342.2 + 2621 0.69 0.298279
Target:  5'- cGCG-CuCGCCGGCGUAUCggcggCGACACcgGCa -3'
miRNA:   3'- -CGCaGuGCGGCCGCGUGG-----GCUGUG--CG- -5'
26104 5' -60.3 NC_005342.2 + 2661 0.9 0.00881
Target:  5'- aGCGUCGCGCCGGCgGCGgCCGACAgGCc -3'
miRNA:   3'- -CGCAGUGCGGCCG-CGUgGGCUGUgCG- -5'
26104 5' -60.3 NC_005342.2 + 2967 0.71 0.233189
Target:  5'- cCGUagacgcuCGCCGGCGCGUCCGccggacguaGCGCGCg -3'
miRNA:   3'- cGCAgu-----GCGGCCGCGUGGGC---------UGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.