miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26108 3' -53.6 NC_005342.2 + 38564 0.66 0.785188
Target:  5'- cGUGCGCagccCGcaggGCAGCGaggacaacgagaUGCCGGGCGc -3'
miRNA:   3'- -CGCGUGaa--GCa---UGUCGC------------ACGGUUCGC- -5'
26108 3' -53.6 NC_005342.2 + 22843 0.66 0.785188
Target:  5'- uGCGCGCcgcCGUGCucgcCGUGCCcgGGGUGa -3'
miRNA:   3'- -CGCGUGaa-GCAUGuc--GCACGG--UUCGC- -5'
26108 3' -53.6 NC_005342.2 + 37256 0.66 0.785188
Target:  5'- gGUGCGCUgcUCGUGCgucAGCucGCCGAcGCGu -3'
miRNA:   3'- -CGCGUGA--AGCAUG---UCGcaCGGUU-CGC- -5'
26108 3' -53.6 NC_005342.2 + 15337 0.66 0.784176
Target:  5'- cGCGCGCUgaacgccgaaugcUUGUAacguGGCcgGUGCaCAAGCGa -3'
miRNA:   3'- -CGCGUGA-------------AGCAUg---UCG--CACG-GUUCGC- -5'
26108 3' -53.6 NC_005342.2 + 29138 0.66 0.774994
Target:  5'- cGCGgGCUUCGauaGCAGCacgcGCCcuGCGg -3'
miRNA:   3'- -CGCgUGAAGCa--UGUCGca--CGGuuCGC- -5'
26108 3' -53.6 NC_005342.2 + 10311 0.66 0.771904
Target:  5'- cGUGCACUUCccacgacgcaggcaGUuuGGCGUcGCCGagAGCGc -3'
miRNA:   3'- -CGCGUGAAG--------------CAugUCGCA-CGGU--UCGC- -5'
26108 3' -53.6 NC_005342.2 + 46709 0.66 0.764644
Target:  5'- cGCGCGCcag--GCGGCGcGCCAAGg- -3'
miRNA:   3'- -CGCGUGaagcaUGUCGCaCGGUUCgc -5'
26108 3' -53.6 NC_005342.2 + 35438 0.66 0.764644
Target:  5'- -gGCACaauaaCGgcauccgGCGGCGUGCCAuAGCa -3'
miRNA:   3'- cgCGUGaa---GCa------UGUCGCACGGU-UCGc -5'
26108 3' -53.6 NC_005342.2 + 10722 0.66 0.764644
Target:  5'- gGCGUA--UCGUACcGCGcgGCCcGGCGc -3'
miRNA:   3'- -CGCGUgaAGCAUGuCGCa-CGGuUCGC- -5'
26108 3' -53.6 NC_005342.2 + 13895 0.66 0.754152
Target:  5'- uCGCGa-UCGUagccGCAGCG-GCCAAcGCGg -3'
miRNA:   3'- cGCGUgaAGCA----UGUCGCaCGGUU-CGC- -5'
26108 3' -53.6 NC_005342.2 + 16990 0.66 0.754152
Target:  5'- cCGCGCUcgacUCGUGCAcGCugcagGCCAauGGCGu -3'
miRNA:   3'- cGCGUGA----AGCAUGU-CGca---CGGU--UCGC- -5'
26108 3' -53.6 NC_005342.2 + 17135 0.66 0.754152
Target:  5'- cGUGCGCgUCGaUAUGGCG-GCCAAcuucGCGc -3'
miRNA:   3'- -CGCGUGaAGC-AUGUCGCaCGGUU----CGC- -5'
26108 3' -53.6 NC_005342.2 + 26184 0.66 0.754152
Target:  5'- cGCgGCACUUCGccgaAUGGCuUGUCGAGCu -3'
miRNA:   3'- -CG-CGUGAAGCa---UGUCGcACGGUUCGc -5'
26108 3' -53.6 NC_005342.2 + 509 0.66 0.754152
Target:  5'- aGCGUgaacGCUucgUCGUACuucGCcuUGCCGAGCGc -3'
miRNA:   3'- -CGCG----UGA---AGCAUGu--CGc-ACGGUUCGC- -5'
26108 3' -53.6 NC_005342.2 + 14790 0.66 0.732789
Target:  5'- cGCGCGCgagcaggucaUUCGcagaccACGGCGUGCCGAuCa -3'
miRNA:   3'- -CGCGUG----------AAGCa-----UGUCGCACGGUUcGc -5'
26108 3' -53.6 NC_005342.2 + 39393 0.66 0.732789
Target:  5'- gGCGCGCUUCcugguCGGCcUGCCu-GCGc -3'
miRNA:   3'- -CGCGUGAAGcau--GUCGcACGGuuCGC- -5'
26108 3' -53.6 NC_005342.2 + 29584 0.66 0.732789
Target:  5'- cGCGCGCgguagUCGU-CGGCGaagcGCUgcGCGa -3'
miRNA:   3'- -CGCGUGa----AGCAuGUCGCa---CGGuuCGC- -5'
26108 3' -53.6 NC_005342.2 + 15933 0.66 0.732789
Target:  5'- uGCGCACUUUcaGCAGguCG-GCCAGGUu -3'
miRNA:   3'- -CGCGUGAAGcaUGUC--GCaCGGUUCGc -5'
26108 3' -53.6 NC_005342.2 + 27001 0.67 0.721944
Target:  5'- cGCGCGCguuugCGUccgGCcccguGGCGUagccGCCGGGCGu -3'
miRNA:   3'- -CGCGUGaa---GCA---UG-----UCGCA----CGGUUCGC- -5'
26108 3' -53.6 NC_005342.2 + 38758 0.67 0.721944
Target:  5'- aCGCGCUUCGUugAGcCGgacGgCGAGUa -3'
miRNA:   3'- cGCGUGAAGCAugUC-GCa--CgGUUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.