miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26109 5' -53.6 NC_005342.2 + 21155 0.66 0.791748
Target:  5'- -cCGGGC---CGUCGGCAacgAAgCGCGCc -3'
miRNA:   3'- uaGCCCGcauGUAGCUGU---UUgGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 26597 0.66 0.791748
Target:  5'- gGUCGGcGCGUuCA-CGACAAagcugGCgGCGUu -3'
miRNA:   3'- -UAGCC-CGCAuGUaGCUGUU-----UGgCGCG- -5'
26109 5' -53.6 NC_005342.2 + 4196 0.66 0.791748
Target:  5'- -cUGcGCGUugacgcucgagaACAUCGGCGugaggauGCCGCGCa -3'
miRNA:   3'- uaGCcCGCA------------UGUAGCUGUu------UGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 23453 0.66 0.791748
Target:  5'- uAUCGGG-GUugaccGCAUUGuuGucGGCCGCGCu -3'
miRNA:   3'- -UAGCCCgCA-----UGUAGCugU--UUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 7687 0.66 0.791748
Target:  5'- gAUCGGcGCGgACAgCGACGGAUCGUu- -3'
miRNA:   3'- -UAGCC-CGCaUGUaGCUGUUUGGCGcg -5'
26109 5' -53.6 NC_005342.2 + 10181 0.66 0.791748
Target:  5'- -gCGcauGCGgcCGUCGGCAucaaAGCUGCGCg -3'
miRNA:   3'- uaGCc--CGCauGUAGCUGU----UUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 20621 0.66 0.781689
Target:  5'- aGUCGGGCcaauucgacgcGaGCGUCG-CAAcggcGCUGCGCc -3'
miRNA:   3'- -UAGCCCG-----------CaUGUAGCuGUU----UGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 10584 0.66 0.781689
Target:  5'- gGUCGGGCGcGCGcUCGAUGAAugucugauCCG-GCg -3'
miRNA:   3'- -UAGCCCGCaUGU-AGCUGUUU--------GGCgCG- -5'
26109 5' -53.6 NC_005342.2 + 6883 0.66 0.781689
Target:  5'- gGUCGGGCGcgUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
26109 5' -53.6 NC_005342.2 + 16928 0.66 0.781689
Target:  5'- -gCGGGCGccgUGC-UCGGCGu-CgGCGCa -3'
miRNA:   3'- uaGCCCGC---AUGuAGCUGUuuGgCGCG- -5'
26109 5' -53.6 NC_005342.2 + 6380 0.66 0.781689
Target:  5'- uUCGGGCGaaUugAUCGGgAAACgGaUGCc -3'
miRNA:   3'- uAGCCCGC--AugUAGCUgUUUGgC-GCG- -5'
26109 5' -53.6 NC_005342.2 + 1849 0.66 0.781689
Target:  5'- cUCGGGUGcccuuUGCucacCGACuguccuAGGCCGCGCc -3'
miRNA:   3'- uAGCCCGC-----AUGua--GCUG------UUUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 18315 0.66 0.781689
Target:  5'- uUCGaGGCGcacgGCAaagCGGCcgaggacGCCGCGCg -3'
miRNA:   3'- uAGC-CCGCa---UGUa--GCUGuu-----UGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 20788 0.66 0.771469
Target:  5'- cUCGGGgGcacGCAU-GGCuGAUCGCGCg -3'
miRNA:   3'- uAGCCCgCa--UGUAgCUGuUUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 29616 0.66 0.771469
Target:  5'- gAUCGGGCcacgcgcgGCGuccUCGGCcgcuuuGCCGUGCg -3'
miRNA:   3'- -UAGCCCGca------UGU---AGCUGuu----UGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 6678 0.66 0.7611
Target:  5'- --gGGGCGcAUuggCGACGAGCCauGCGUg -3'
miRNA:   3'- uagCCCGCaUGua-GCUGUUUGG--CGCG- -5'
26109 5' -53.6 NC_005342.2 + 13876 0.66 0.7611
Target:  5'- -aCGGGC-UGCG-CGGCG-GCCGuCGCg -3'
miRNA:   3'- uaGCCCGcAUGUaGCUGUuUGGC-GCG- -5'
26109 5' -53.6 NC_005342.2 + 25127 0.66 0.760055
Target:  5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3'
miRNA:   3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5'
26109 5' -53.6 NC_005342.2 + 9486 0.66 0.757962
Target:  5'- aAUCGcuGCGUGCGccugcgcguuuugcUCGACGAGCUgcuucaGCGCg -3'
miRNA:   3'- -UAGCc-CGCAUGU--------------AGCUGUUUGG------CGCG- -5'
26109 5' -53.6 NC_005342.2 + 28311 0.66 0.750593
Target:  5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.