miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26109 5' -53.6 NC_005342.2 + 22019 0.66 0.750593
Target:  5'- -gCGGGCGUuuucucgacGCAgaUCacgcgggcgGACAGAUCGUGCa -3'
miRNA:   3'- uaGCCCGCA---------UGU--AG---------CUGUUUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 5168 0.66 0.750593
Target:  5'- cAUCGccugcaGGCGcgGCGUCGGC--ACCGuCGCa -3'
miRNA:   3'- -UAGC------CCGCa-UGUAGCUGuuUGGC-GCG- -5'
26109 5' -53.6 NC_005342.2 + 28311 0.66 0.750593
Target:  5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 21444 0.66 0.750593
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5'
26109 5' -53.6 NC_005342.2 + 41003 0.66 0.73996
Target:  5'- --aGGGCGgcgACuUCGACGAgGCCGaGCu -3'
miRNA:   3'- uagCCCGCa--UGuAGCUGUU-UGGCgCG- -5'
26109 5' -53.6 NC_005342.2 + 41113 0.66 0.73996
Target:  5'- uUCGcGGUGaACAUCGA---GCaCGCGCa -3'
miRNA:   3'- uAGC-CCGCaUGUAGCUguuUG-GCGCG- -5'
26109 5' -53.6 NC_005342.2 + 20174 0.66 0.73996
Target:  5'- cUCGGGCGcACAcaagaaggCGGCAGuaaugggcgcgGCuCGCGCu -3'
miRNA:   3'- uAGCCCGCaUGUa-------GCUGUU-----------UG-GCGCG- -5'
26109 5' -53.6 NC_005342.2 + 18033 0.66 0.73996
Target:  5'- gAUCaGGCGgcgGCuaucaCGGCAAACgGCGUg -3'
miRNA:   3'- -UAGcCCGCa--UGua---GCUGUUUGgCGCG- -5'
26109 5' -53.6 NC_005342.2 + 25301 0.66 0.73996
Target:  5'- -cCGGGCcgACGcCGGCGAcgGCCGCGa -3'
miRNA:   3'- uaGCCCGcaUGUaGCUGUU--UGGCGCg -5'
26109 5' -53.6 NC_005342.2 + 16459 0.66 0.73996
Target:  5'- gAUCGGGCGcAUGUCGcACGAcaCGCGa -3'
miRNA:   3'- -UAGCCCGCaUGUAGC-UGUUugGCGCg -5'
26109 5' -53.6 NC_005342.2 + 21018 0.66 0.73996
Target:  5'- -aCGGGCGa----CGAaguGGCCGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUgu-UUGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 31813 0.66 0.73996
Target:  5'- cGUCGGcGCGUuCAgugaCGGCAGuuCCGaCGCg -3'
miRNA:   3'- -UAGCC-CGCAuGUa---GCUGUUu-GGC-GCG- -5'
26109 5' -53.6 NC_005342.2 + 21983 0.66 0.73889
Target:  5'- -gCGGGcCGUuuucuuuGCGUCGGCGcgAAUCaGCGCg -3'
miRNA:   3'- uaGCCC-GCA-------UGUAGCUGU--UUGG-CGCG- -5'
26109 5' -53.6 NC_005342.2 + 1601 0.67 0.733526
Target:  5'- gGUCGaaaGCGU-CGUCGGCGGcguagcccugaaugcGCUGCGCg -3'
miRNA:   3'- -UAGCc--CGCAuGUAGCUGUU---------------UGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 39341 0.67 0.729215
Target:  5'- -cCGGGCGccGCGccgagcUCGACG--UCGCGCa -3'
miRNA:   3'- uaGCCCGCa-UGU------AGCUGUuuGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 8956 0.67 0.729215
Target:  5'- -gCGGcCGUGCG-CGGCGgcGACCGaCGCg -3'
miRNA:   3'- uaGCCcGCAUGUaGCUGU--UUGGC-GCG- -5'
26109 5' -53.6 NC_005342.2 + 47375 0.67 0.729215
Target:  5'- -aUGGGCG-GCAcguUCGAU---CCGCGCg -3'
miRNA:   3'- uaGCCCGCaUGU---AGCUGuuuGGCGCG- -5'
26109 5' -53.6 NC_005342.2 + 35614 0.67 0.729215
Target:  5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3'
miRNA:   3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5'
26109 5' -53.6 NC_005342.2 + 28003 0.67 0.729215
Target:  5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3'
miRNA:   3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5'
26109 5' -53.6 NC_005342.2 + 19564 0.67 0.718368
Target:  5'- gGUCGGcGCG-GCAcaaGGgGAAUCGCGCg -3'
miRNA:   3'- -UAGCC-CGCaUGUag-CUgUUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.