miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26115 5' -48.9 NC_005342.2 + 14972 0.66 0.95759
Target:  5'- gCUCGgcuGAACUUGacaaucaucCGA-CGAACGCAUa -3'
miRNA:   3'- -GAGCau-CUUGAAU---------GCUcGCUUGCGUA- -5'
26115 5' -48.9 NC_005342.2 + 19616 0.66 0.95759
Target:  5'- -aCGgcGAGC--GCG-GCGAGCGCGg -3'
miRNA:   3'- gaGCauCUUGaaUGCuCGCUUGCGUa -5'
26115 5' -48.9 NC_005342.2 + 22536 0.66 0.953183
Target:  5'- -aCGU-GAugUUGcCGAGCGAcgaGCGCGc -3'
miRNA:   3'- gaGCAuCUugAAU-GCUCGCU---UGCGUa -5'
26115 5' -48.9 NC_005342.2 + 2786 0.67 0.932528
Target:  5'- gUCGUAGGcgACUacgaaguccgGCGAcGUGAACGCAg -3'
miRNA:   3'- gAGCAUCU--UGAa---------UGCU-CGCUUGCGUa -5'
26115 5' -48.9 NC_005342.2 + 40106 0.67 0.920342
Target:  5'- -aCGUGGAcGCgaugGGGCGAGCGCGa -3'
miRNA:   3'- gaGCAUCU-UGaaugCUCGCUUGCGUa -5'
26115 5' -48.9 NC_005342.2 + 27120 0.67 0.918406
Target:  5'- cCUCGUGGAAC-UGCGcuucaaacGGCGAguuguauggugucgGCGCGc -3'
miRNA:   3'- -GAGCAUCUUGaAUGC--------UCGCU--------------UGCGUa -5'
26115 5' -48.9 NC_005342.2 + 18508 0.67 0.913781
Target:  5'- -gCGUgcAGAACUacGCGAGCGGGCaGCGc -3'
miRNA:   3'- gaGCA--UCUUGAa-UGCUCGCUUG-CGUa -5'
26115 5' -48.9 NC_005342.2 + 35884 0.68 0.899735
Target:  5'- -aCGUAGAGCgccugcACGAGCacgagauuGGGCGCAa -3'
miRNA:   3'- gaGCAUCUUGaa----UGCUCG--------CUUGCGUa -5'
26115 5' -48.9 NC_005342.2 + 30557 0.68 0.892255
Target:  5'- gUCGUAGAACgcguCGAGCGccuGGCGguUc -3'
miRNA:   3'- gAGCAUCUUGaau-GCUCGC---UUGCguA- -5'
26115 5' -48.9 NC_005342.2 + 15837 0.69 0.859427
Target:  5'- cCUUGUGcGAGCccGCGAGCGAGcCGCc- -3'
miRNA:   3'- -GAGCAU-CUUGaaUGCUCGCUU-GCGua -5'
26115 5' -48.9 NC_005342.2 + 10693 0.69 0.831968
Target:  5'- gUCGgcGAGCUgacgcACGAGC-AGCGCAc -3'
miRNA:   3'- gAGCauCUUGAa----UGCUCGcUUGCGUa -5'
26115 5' -48.9 NC_005342.2 + 46036 0.71 0.749222
Target:  5'- aCUCGUcgaAGAucgACUgaACGAGCGGGCGCc- -3'
miRNA:   3'- -GAGCA---UCU---UGAa-UGCUCGCUUGCGua -5'
26115 5' -48.9 NC_005342.2 + 6626 0.73 0.646231
Target:  5'- -cCGccAGAGC--ACGAGCGAGCGCGUg -3'
miRNA:   3'- gaGCa-UCUUGaaUGCUCGCUUGCGUA- -5'
26115 5' -48.9 NC_005342.2 + 5981 0.97 0.022669
Target:  5'- uCUCGUAG-ACUUACGAGCGAACGCAUa -3'
miRNA:   3'- -GAGCAUCuUGAAUGCUCGCUUGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.