miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26117 5' -55.7 NC_005342.2 + 35702 0.66 0.634777
Target:  5'- ---cUCGCGACCU-GGUucGCGGUCGc -3'
miRNA:   3'- uagaAGCGCUGGAgCCAu-UGCCGGUu -5'
26117 5' -55.7 NC_005342.2 + 38615 0.66 0.61228
Target:  5'- -gCUUCGCG-CUgaUCGGc-ACGGCCAAc -3'
miRNA:   3'- uaGAAGCGCuGG--AGCCauUGCCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 45430 0.66 0.601053
Target:  5'- cGUCUcgcguUCGCGGCCU-GGaacAGCGGUCAGg -3'
miRNA:   3'- -UAGA-----AGCGCUGGAgCCa--UUGCCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 25740 0.67 0.567577
Target:  5'- cUCUUUGCGGCCcgucUCGGcaucgAGCaGGCCGc -3'
miRNA:   3'- uAGAAGCGCUGG----AGCCa----UUG-CCGGUu -5'
26117 5' -55.7 NC_005342.2 + 3773 0.67 0.555413
Target:  5'- -aCUUCGCacCCUCGGUAucuuucugcaccgGCaGGCCAAg -3'
miRNA:   3'- uaGAAGCGcuGGAGCCAU-------------UG-CCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 11173 0.67 0.542233
Target:  5'- uUC-UCGCGACCcgcgcgcacgugauUCGGgcGCGGCUc- -3'
miRNA:   3'- uAGaAGCGCUGG--------------AGCCauUGCCGGuu -5'
26117 5' -55.7 NC_005342.2 + 19484 0.67 0.534592
Target:  5'- gGUCgaCGCGGCgCUCGGgcaguuGCuGGCCGAc -3'
miRNA:   3'- -UAGaaGCGCUG-GAGCCau----UG-CCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 31945 0.67 0.533503
Target:  5'- cGUCUugagcUCGCGGauaUCGGUuggcagcAGCGGCCGAa -3'
miRNA:   3'- -UAGA-----AGCGCUgg-AGCCA-------UUGCCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 20048 0.68 0.51298
Target:  5'- cUCUcUCGCaACCUCGauuGCGGCCGAc -3'
miRNA:   3'- uAGA-AGCGcUGGAGCcauUGCCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 13928 0.76 0.157048
Target:  5'- -cCUUgGCGACUUCGGgccGGCGGCCGGu -3'
miRNA:   3'- uaGAAgCGCUGGAGCCa--UUGCCGGUU- -5'
26117 5' -55.7 NC_005342.2 + 3459 1.04 0.001359
Target:  5'- gAUCUUCGCGACCUCGGUAACGGCCAAg -3'
miRNA:   3'- -UAGAAGCGCUGGAGCCAUUGCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.