miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26118 3' -55.1 NC_005342.2 + 30485 0.66 0.69287
Target:  5'- gCGCAagCAGCGugAGCGCGGCgGccuUCGc -3'
miRNA:   3'- -GCGUa-GUCGU--UCGCGCCGgUcauAGC- -5'
26118 3' -55.1 NC_005342.2 + 13010 0.66 0.69287
Target:  5'- cCGCA-CuGCAGGCGCuGUCAGUugCGg -3'
miRNA:   3'- -GCGUaGuCGUUCGCGcCGGUCAuaGC- -5'
26118 3' -55.1 NC_005342.2 + 47688 0.66 0.69287
Target:  5'- uGCuauUCGGCAAGCugcucgGCGcGCUGGUcGUCGg -3'
miRNA:   3'- gCGu--AGUCGUUCG------CGC-CGGUCA-UAGC- -5'
26118 3' -55.1 NC_005342.2 + 19558 0.66 0.69287
Target:  5'- uCGCA-CGGUcGGCGCGGCacaAGgggaAUCGc -3'
miRNA:   3'- -GCGUaGUCGuUCGCGCCGg--UCa---UAGC- -5'
26118 3' -55.1 NC_005342.2 + 47724 0.66 0.69287
Target:  5'- gCGuCAUCGGCGGuGUGCGGCU-GUgcuacAUCGg -3'
miRNA:   3'- -GC-GUAGUCGUU-CGCGCCGGuCA-----UAGC- -5'
26118 3' -55.1 NC_005342.2 + 20641 0.66 0.69287
Target:  5'- aGCGUC-GCAacGGCGCuGcGCCAGUGg-- -3'
miRNA:   3'- gCGUAGuCGU--UCGCG-C-CGGUCAUagc -5'
26118 3' -55.1 NC_005342.2 + 9072 0.66 0.681807
Target:  5'- gCGCG-CAGCAcGgGCGGCaGGaUGUCGu -3'
miRNA:   3'- -GCGUaGUCGUuCgCGCCGgUC-AUAGC- -5'
26118 3' -55.1 NC_005342.2 + 47251 0.66 0.670694
Target:  5'- gGCGcCGGCcGGCGCGaCCAGUAcaUUGa -3'
miRNA:   3'- gCGUaGUCGuUCGCGCcGGUCAU--AGC- -5'
26118 3' -55.1 NC_005342.2 + 43128 0.66 0.670694
Target:  5'- gGCAUCGGCAcGGCGCGcGCguacgGUCa -3'
miRNA:   3'- gCGUAGUCGU-UCGCGC-CGguca-UAGc -5'
26118 3' -55.1 NC_005342.2 + 7708 0.66 0.670694
Target:  5'- aGCcgugCAGCA--UGCGGCCGGU-UCGa -3'
miRNA:   3'- gCGua--GUCGUucGCGCCGGUCAuAGC- -5'
26118 3' -55.1 NC_005342.2 + 25582 0.66 0.670694
Target:  5'- gGCAgacggccauccUCGGCGcGUGCGGCgCAGguuucGUCGg -3'
miRNA:   3'- gCGU-----------AGUCGUuCGCGCCG-GUCa----UAGC- -5'
26118 3' -55.1 NC_005342.2 + 26383 0.66 0.670694
Target:  5'- gGCGUCGcGUAAGCGUugcuguccagauGGCCGuaGUCGg -3'
miRNA:   3'- gCGUAGU-CGUUCGCG------------CCGGUcaUAGC- -5'
26118 3' -55.1 NC_005342.2 + 45159 0.66 0.670694
Target:  5'- gCGCAUUcGCGAGCaugGCGGCCAa----- -3'
miRNA:   3'- -GCGUAGuCGUUCG---CGCCGGUcauagc -5'
26118 3' -55.1 NC_005342.2 + 31800 0.66 0.659544
Target:  5'- uCGCAuagaUCGGCGucGGCGCGuuCAGUGaCGg -3'
miRNA:   3'- -GCGU----AGUCGU--UCGCGCcgGUCAUaGC- -5'
26118 3' -55.1 NC_005342.2 + 10196 0.66 0.659544
Target:  5'- gGCAUCaaAGCugcGCGCGGUCuGcuUGUCGa -3'
miRNA:   3'- gCGUAG--UCGuu-CGCGCCGGuC--AUAGC- -5'
26118 3' -55.1 NC_005342.2 + 18886 0.66 0.648368
Target:  5'- uGCGUguuaAGCAGccGCGCGGCUGGUAc-- -3'
miRNA:   3'- gCGUAg---UCGUU--CGCGCCGGUCAUagc -5'
26118 3' -55.1 NC_005342.2 + 21232 0.66 0.648368
Target:  5'- aCGCAaugggucaaguUCcuGGCcGGCGCGGCgGGcAUCGa -3'
miRNA:   3'- -GCGU-----------AG--UCGuUCGCGCCGgUCaUAGC- -5'
26118 3' -55.1 NC_005342.2 + 16810 0.66 0.637176
Target:  5'- uCGCucgagCAGCGcGuCGCGGCCAaGgcgAUCGa -3'
miRNA:   3'- -GCGua---GUCGUuC-GCGCCGGU-Ca--UAGC- -5'
26118 3' -55.1 NC_005342.2 + 4833 0.66 0.637176
Target:  5'- aGCGUCuGCcuGCGCGGgCGGcugCGg -3'
miRNA:   3'- gCGUAGuCGuuCGCGCCgGUCauaGC- -5'
26118 3' -55.1 NC_005342.2 + 26092 0.67 0.625979
Target:  5'- gCGCAgcgaacCAGCuuguAGCGCGcGCCGcGUcgCGg -3'
miRNA:   3'- -GCGUa-----GUCGu---UCGCGC-CGGU-CAuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.