miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26119 3' -58.5 NC_005342.2 + 6580 0.66 0.522206
Target:  5'- cGCGCCGCCcagcGCCGcAGU-CgCAGGUa -3'
miRNA:   3'- -CGCGGCGGcuu-UGGC-UCAcG-GUCCAg -5'
26119 3' -58.5 NC_005342.2 + 31685 0.66 0.522206
Target:  5'- ---aCGCCGAAGCCGcccUGCUcGGUCg -3'
miRNA:   3'- cgcgGCGGCUUUGGCuc-ACGGuCCAG- -5'
26119 3' -58.5 NC_005342.2 + 15712 0.66 0.511821
Target:  5'- cGCGCCGCgCGAcgUCGGcaaacgcuuCCGGGUCa -3'
miRNA:   3'- -CGCGGCG-GCUuuGGCUcac------GGUCCAG- -5'
26119 3' -58.5 NC_005342.2 + 10553 0.66 0.500497
Target:  5'- -aGCCGCCacgcGCCGGGccgGCCgacgagcGGGUCg -3'
miRNA:   3'- cgCGGCGGcuu-UGGCUCa--CGG-------UCCAG- -5'
26119 3' -58.5 NC_005342.2 + 9928 0.66 0.491315
Target:  5'- gGCGCauuuCGCCGGucGCCGcGUGCaC-GGUCg -3'
miRNA:   3'- -CGCG----GCGGCUu-UGGCuCACG-GuCCAG- -5'
26119 3' -58.5 NC_005342.2 + 27795 0.66 0.491315
Target:  5'- uGCGCCcgaGCCGGcGGCCGAGUagGCUuuuucGGUUg -3'
miRNA:   3'- -CGCGG---CGGCU-UUGGCUCA--CGGu----CCAG- -5'
26119 3' -58.5 NC_005342.2 + 36020 0.66 0.491315
Target:  5'- cGCGCCGcCCGAGuagucGCCGGGcgucgcaucGCCuacGGUUg -3'
miRNA:   3'- -CGCGGC-GGCUU-----UGGCUCa--------CGGu--CCAG- -5'
26119 3' -58.5 NC_005342.2 + 35702 0.66 0.491315
Target:  5'- cGCGCCGCCGguGCCGuGUacGUU--GUCg -3'
miRNA:   3'- -CGCGGCGGCuuUGGCuCA--CGGucCAG- -5'
26119 3' -58.5 NC_005342.2 + 25419 0.66 0.481205
Target:  5'- uGUGCCGgCGGuAGCCGucacgccuggcGUGCC-GGUCa -3'
miRNA:   3'- -CGCGGCgGCU-UUGGCu----------CACGGuCCAG- -5'
26119 3' -58.5 NC_005342.2 + 4377 0.67 0.471197
Target:  5'- aGUGCCG-CGAGcACCGGGUGCUGcGUUu -3'
miRNA:   3'- -CGCGGCgGCUU-UGGCUCACGGUcCAG- -5'
26119 3' -58.5 NC_005342.2 + 3193 0.67 0.471197
Target:  5'- cGCGCCGCCcgccCCGAugacGCCGGG-Ca -3'
miRNA:   3'- -CGCGGCGGcuuuGGCUca--CGGUCCaG- -5'
26119 3' -58.5 NC_005342.2 + 2711 0.67 0.470202
Target:  5'- cGUGCCcgucacgGCCGAGauugcgGCCGccGUGCC-GGUCg -3'
miRNA:   3'- -CGCGG-------CGGCUU------UGGCu-CACGGuCCAG- -5'
26119 3' -58.5 NC_005342.2 + 45619 0.67 0.461296
Target:  5'- gGCGCUGCuCGAGgugcuuGCCGAGcugGCCGcGUUg -3'
miRNA:   3'- -CGCGGCG-GCUU------UGGCUCa--CGGUcCAG- -5'
26119 3' -58.5 NC_005342.2 + 679 0.67 0.451507
Target:  5'- cGUGCCGCCGcccgcgagcGCCGuG-GCgAGGUUg -3'
miRNA:   3'- -CGCGGCGGCuu-------UGGCuCaCGgUCCAG- -5'
26119 3' -58.5 NC_005342.2 + 1804 0.67 0.441832
Target:  5'- cCGCCGuCCGAAuACCaGAGcgugcagGCCGGcGUCg -3'
miRNA:   3'- cGCGGC-GGCUU-UGG-CUCa------CGGUC-CAG- -5'
26119 3' -58.5 NC_005342.2 + 38969 0.67 0.432275
Target:  5'- cGCGCCGCCuggcAAGCCGcGaacGCCGcgucGGUCg -3'
miRNA:   3'- -CGCGGCGGc---UUUGGCuCa--CGGU----CCAG- -5'
26119 3' -58.5 NC_005342.2 + 45299 0.67 0.42284
Target:  5'- cCGCCGCCGGcgcgacGCUGcAGgcUGCCGGuGUCg -3'
miRNA:   3'- cGCGGCGGCUu-----UGGC-UC--ACGGUC-CAG- -5'
26119 3' -58.5 NC_005342.2 + 38058 0.68 0.417238
Target:  5'- uGUGCCGaCCGAAGCCGAacugaucgacgcgcuGUcgcguGUCGGGUg -3'
miRNA:   3'- -CGCGGC-GGCUUUGGCU---------------CA-----CGGUCCAg -5'
26119 3' -58.5 NC_005342.2 + 26663 0.68 0.41353
Target:  5'- cGCGCCggcuGCCGAuAgCGucaGGUcGCCAGGUg -3'
miRNA:   3'- -CGCGG----CGGCUuUgGC---UCA-CGGUCCAg -5'
26119 3' -58.5 NC_005342.2 + 25772 0.68 0.41353
Target:  5'- cGCaGCCGCCGAAccgccGCCGGcUGCCGccGG-Cg -3'
miRNA:   3'- -CG-CGGCGGCUU-----UGGCUcACGGU--CCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.