miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26119 5' -55 NC_005342.2 + 4700 0.66 0.720441
Target:  5'- gCGAUCaGGCGC-GGUCa-UCGUCGa -3'
miRNA:   3'- gGCUGGaCCGCGaCCAGaaAGCAGUg -5'
26119 5' -55 NC_005342.2 + 28788 0.66 0.676937
Target:  5'- gCCGACCUGGCGCUuGauUCgauaGUC-Ca -3'
miRNA:   3'- -GGCUGGACCGCGAcC--AGaaagCAGuG- -5'
26119 5' -55 NC_005342.2 + 26819 0.67 0.651563
Target:  5'- cCCGGCCUGcagcgucguagcgaGUGCU-GUCg--CGUCGCg -3'
miRNA:   3'- -GGCUGGAC--------------CGCGAcCAGaaaGCAGUG- -5'
26119 5' -55 NC_005342.2 + 37280 0.67 0.643816
Target:  5'- gCCGAC---GCGUUGGUCUaccagcCGUCACg -3'
miRNA:   3'- -GGCUGgacCGCGACCAGAaa----GCAGUG- -5'
26119 5' -55 NC_005342.2 + 1255 0.67 0.643816
Target:  5'- gCCG-CCUGGCGC-GcGUUg--CGUUACg -3'
miRNA:   3'- -GGCuGGACCGCGaC-CAGaaaGCAGUG- -5'
26119 5' -55 NC_005342.2 + 15112 0.67 0.63274
Target:  5'- aUCGACUUGGCGUcGGUUga--GUUGCg -3'
miRNA:   3'- -GGCUGGACCGCGaCCAGaaagCAGUG- -5'
26119 5' -55 NC_005342.2 + 44733 0.67 0.620556
Target:  5'- uCCGGCCgcucgaccgcgcgUGGCGCUGG-Cgg-CG-CGCa -3'
miRNA:   3'- -GGCUGG-------------ACCGCGACCaGaaaGCaGUG- -5'
26119 5' -55 NC_005342.2 + 16116 0.68 0.610597
Target:  5'- aCGugCUGGCGCUuaucGcGUCggaacugcCGUCACu -3'
miRNA:   3'- gGCugGACCGCGA----C-CAGaaa-----GCAGUG- -5'
26119 5' -55 NC_005342.2 + 29360 0.68 0.588528
Target:  5'- cCCGcGCCUGccGCGCcGGUCgUUUGUUGCa -3'
miRNA:   3'- -GGC-UGGAC--CGCGaCCAGaAAGCAGUG- -5'
26119 5' -55 NC_005342.2 + 19273 0.68 0.566608
Target:  5'- gCGACCUGGUGCUGcUCg--CGagcaagCACa -3'
miRNA:   3'- gGCUGGACCGCGACcAGaaaGCa-----GUG- -5'
26119 5' -55 NC_005342.2 + 26450 0.7 0.496117
Target:  5'- gCCGACCUGGcCGCcuugUGGaUCgucgugaaugugCGUCGCg -3'
miRNA:   3'- -GGCUGGACC-GCG----ACC-AGaaa---------GCAGUG- -5'
26119 5' -55 NC_005342.2 + 17644 0.7 0.491966
Target:  5'- uCCGGCCUGGgGUUucucggcgaagcGGUCga-UGUCGCg -3'
miRNA:   3'- -GGCUGGACCgCGA------------CCAGaaaGCAGUG- -5'
26119 5' -55 NC_005342.2 + 4640 0.7 0.461361
Target:  5'- -aGGCC-GGCGCgcgGGUCUUUCuUCAg -3'
miRNA:   3'- ggCUGGaCCGCGa--CCAGAAAGcAGUg -5'
26119 5' -55 NC_005342.2 + 45487 0.7 0.461361
Target:  5'- cCCGACCUcgaGGCGgc-GUCgaUCGUCACg -3'
miRNA:   3'- -GGCUGGA---CCGCgacCAGaaAGCAGUG- -5'
26119 5' -55 NC_005342.2 + 20521 0.7 0.451384
Target:  5'- cCCGAa-UGGCGcCUGGUCgacagcCGUCGCc -3'
miRNA:   3'- -GGCUggACCGC-GACCAGaaa---GCAGUG- -5'
26119 5' -55 NC_005342.2 + 24689 0.72 0.367349
Target:  5'- gCCGACCUGGCucaaagGCUGGaCg---GUCACg -3'
miRNA:   3'- -GGCUGGACCG------CGACCaGaaagCAGUG- -5'
26119 5' -55 NC_005342.2 + 2733 0.73 0.302199
Target:  5'- gCGGCCgccGUGCcGGUCgcgUUCGUCACg -3'
miRNA:   3'- gGCUGGac-CGCGaCCAGa--AAGCAGUG- -5'
26119 5' -55 NC_005342.2 + 29494 0.74 0.294711
Target:  5'- aCGAgCUGGCGCgGGUCaUUCGcUACg -3'
miRNA:   3'- gGCUgGACCGCGaCCAGaAAGCaGUG- -5'
26119 5' -55 NC_005342.2 + 2860 1.12 0.000589
Target:  5'- gCCGACCUGGCGCUGGUCUUUCGUCACg -3'
miRNA:   3'- -GGCUGGACCGCGACCAGAAAGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.