miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26121 5' -54 NC_005342.2 + 8902 0.65 0.798568
Target:  5'- --gCCugCGGUgcgucguagaagCGCGCCGcCGCCGa -3'
miRNA:   3'- ccaGGugGCUAaa----------GCGUGGUaGCGGC- -5'
26121 5' -54 NC_005342.2 + 36792 0.66 0.792705
Target:  5'- gGGUuuGCgCGGaUUCGCGCUAUCGaggaCGu -3'
miRNA:   3'- -CCAggUG-GCUaAAGCGUGGUAGCg---GC- -5'
26121 5' -54 NC_005342.2 + 36001 0.66 0.788762
Target:  5'- cGUCCugCGccaugcgauaCGCGCCGcccgaguagUCGCCGg -3'
miRNA:   3'- cCAGGugGCuaaa------GCGUGGU---------AGCGGC- -5'
26121 5' -54 NC_005342.2 + 34155 0.66 0.782799
Target:  5'- --gUCGCCGAac-CGuCGCCGUCGCUGc -3'
miRNA:   3'- ccaGGUGGCUaaaGC-GUGGUAGCGGC- -5'
26121 5' -54 NC_005342.2 + 21658 0.66 0.772735
Target:  5'- cGUCgACCGGcUUUCGCAUCGaCGgCGc -3'
miRNA:   3'- cCAGgUGGCU-AAAGCGUGGUaGCgGC- -5'
26121 5' -54 NC_005342.2 + 25397 0.66 0.772735
Target:  5'- cGUCCGgCGA--UCGCGCUugcagugUGCCGg -3'
miRNA:   3'- cCAGGUgGCUaaAGCGUGGua-----GCGGC- -5'
26121 5' -54 NC_005342.2 + 38381 0.66 0.762524
Target:  5'- --aCCgGCCGAUgcCGCGCCGgcuggCGCUGa -3'
miRNA:   3'- ccaGG-UGGCUAaaGCGUGGUa----GCGGC- -5'
26121 5' -54 NC_005342.2 + 34735 0.66 0.752177
Target:  5'- cGGUCgCGCCGAa----CACCAUCGgCGu -3'
miRNA:   3'- -CCAG-GUGGCUaaagcGUGGUAGCgGC- -5'
26121 5' -54 NC_005342.2 + 36536 0.66 0.752177
Target:  5'- --gCCGUCGAgugCGCgcuacgGCCAUCGCCGg -3'
miRNA:   3'- ccaGGUGGCUaaaGCG------UGGUAGCGGC- -5'
26121 5' -54 NC_005342.2 + 25047 0.66 0.752177
Target:  5'- cGUCgCGCCGuaGUUgaUCGCACUGUCacuGCCGu -3'
miRNA:   3'- cCAG-GUGGC--UAA--AGCGUGGUAG---CGGC- -5'
26121 5' -54 NC_005342.2 + 2607 0.67 0.741706
Target:  5'- --aCCGCgCGGUUcaUCGCGC--UCGCCGg -3'
miRNA:   3'- ccaGGUG-GCUAA--AGCGUGguAGCGGC- -5'
26121 5' -54 NC_005342.2 + 30387 0.67 0.741706
Target:  5'- -uUCaugaaGCCG--UUCGCGCCGcCGCCGg -3'
miRNA:   3'- ccAGg----UGGCuaAAGCGUGGUaGCGGC- -5'
26121 5' -54 NC_005342.2 + 39499 0.67 0.741706
Target:  5'- -aUCCgACCGAcgccgcUCGCGCUGUgGCCGu -3'
miRNA:   3'- ccAGG-UGGCUaa----AGCGUGGUAgCGGC- -5'
26121 5' -54 NC_005342.2 + 708 0.67 0.73537
Target:  5'- uGGUCgCGCCGGccg-GCGCCucguucagcgcggcaGUCGCCGc -3'
miRNA:   3'- -CCAG-GUGGCUaaagCGUGG---------------UAGCGGC- -5'
26121 5' -54 NC_005342.2 + 7898 0.67 0.731124
Target:  5'- gGGUa-GuuGAUaUUCGCGCCGcugUCGCCGu -3'
miRNA:   3'- -CCAggUggCUA-AAGCGUGGU---AGCGGC- -5'
26121 5' -54 NC_005342.2 + 28025 0.67 0.731124
Target:  5'- cGGcUCGCCGcccggCGCGCuCGUCGUCGa -3'
miRNA:   3'- -CCaGGUGGCuaaa-GCGUG-GUAGCGGC- -5'
26121 5' -54 NC_005342.2 + 3357 0.67 0.731124
Target:  5'- uGUCgACCGg---CGuCGCCGUCGUCGc -3'
miRNA:   3'- cCAGgUGGCuaaaGC-GUGGUAGCGGC- -5'
26121 5' -54 NC_005342.2 + 23655 0.67 0.731124
Target:  5'- cGGUCgCgGCUGuuccaggUCGCGCaGUCGCCGg -3'
miRNA:   3'- -CCAG-G-UGGCuaa----AGCGUGgUAGCGGC- -5'
26121 5' -54 NC_005342.2 + 23658 0.67 0.731124
Target:  5'- cGGaacgCCACCGGcUUCcggcggcuGCAUCGUgGCCGg -3'
miRNA:   3'- -CCa---GGUGGCUaAAG--------CGUGGUAgCGGC- -5'
26121 5' -54 NC_005342.2 + 12367 0.67 0.731124
Target:  5'- --cCCGCCcgg--CGCGCCAgugUCGCCGc -3'
miRNA:   3'- ccaGGUGGcuaaaGCGUGGU---AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.