miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26122 3' -61.3 NC_005342.2 + 2665 0.66 0.432069
Target:  5'- aCCGGGcugGU-CGAGcGCCAUGaGCGC-Cg -3'
miRNA:   3'- -GGCCCca-CAuGCUC-CGGUGC-CGCGcG- -5'
26122 3' -61.3 NC_005342.2 + 27972 0.66 0.422939
Target:  5'- uUGGauucaGUGgAUGAGGCCgACaGCGCGCa -3'
miRNA:   3'- gGCCc----CACaUGCUCCGG-UGcCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 880 0.66 0.413927
Target:  5'- -aGGGGUGUugGucGGCauuGCGcccucguaGCGUGCg -3'
miRNA:   3'- ggCCCCACAugCu-CCGg--UGC--------CGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 24540 0.66 0.413927
Target:  5'- gCCGGcGGcggGUACGugccGGGCUaccaguACGGCGUGa -3'
miRNA:   3'- -GGCC-CCa--CAUGC----UCCGG------UGCCGCGCg -5'
26122 3' -61.3 NC_005342.2 + 20688 0.66 0.399756
Target:  5'- gCCGGauggcGUGUACGGaucgcagacgaaugcGGUgaugACGGCGCGCg -3'
miRNA:   3'- -GGCCc----CACAUGCU---------------CCGg---UGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 40182 0.66 0.396262
Target:  5'- aCGGGGcUGcaGCG-GGCUACGGUaGUGUg -3'
miRNA:   3'- gGCCCC-ACa-UGCuCCGGUGCCG-CGCG- -5'
26122 3' -61.3 NC_005342.2 + 10564 0.67 0.379089
Target:  5'- gCCGGGccGgccgACGAgcgGGUCG-GGCGCGCg -3'
miRNA:   3'- -GGCCCcaCa---UGCU---CCGGUgCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 29527 0.67 0.370692
Target:  5'- aCCGGGccGU-UGAuGGCgAuCGGCGCGCc -3'
miRNA:   3'- -GGCCCcaCAuGCU-CCGgU-GCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 29429 0.67 0.353476
Target:  5'- cCCGGGuUGccgccggcUGCGaAGGCCGCugcagcguccgucGGCGUGCc -3'
miRNA:   3'- -GGCCCcAC--------AUGC-UCCGGUG-------------CCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 17797 0.67 0.346273
Target:  5'- aCGGuGaaacagacGUGgcGCGAGGCagucgcUACGGCGCGCg -3'
miRNA:   3'- gGCC-C--------CACa-UGCUCCG------GUGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 9624 0.67 0.346273
Target:  5'- aCGGGcaccACG-GGCaGCGGCGCGCc -3'
miRNA:   3'- gGCCCcacaUGCuCCGgUGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 44088 0.67 0.338393
Target:  5'- aUCGGacagGUGCGcuGCUcgGCGGCGCGCg -3'
miRNA:   3'- -GGCCcca-CAUGCucCGG--UGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 47594 0.68 0.330645
Target:  5'- uUGGaGGUGagcAUGuGGCU-CGGCGCGCu -3'
miRNA:   3'- gGCC-CCACa--UGCuCCGGuGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 3139 0.68 0.329877
Target:  5'- aCCGGGcugcacggacGUauccugcgugagcACGAGGCCGgugagccggccCGGCGCGCc -3'
miRNA:   3'- -GGCCCca--------CA-------------UGCUCCGGU-----------GCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 38511 0.69 0.280087
Target:  5'- cUCGGcGGcgGUGCGGcGCCcgcacuUGGCGCGCa -3'
miRNA:   3'- -GGCC-CCa-CAUGCUcCGGu-----GCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 44759 0.7 0.241809
Target:  5'- cCCGGcGUcauCGGGGCgGgCGGCGCGCc -3'
miRNA:   3'- -GGCCcCAcauGCUCCGgU-GCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 41003 0.7 0.230054
Target:  5'- -aGGGcGgcgacuucgACGAGGCCGagcucgccCGGCGCGCg -3'
miRNA:   3'- ggCCC-Caca------UGCUCCGGU--------GCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 25107 0.71 0.197659
Target:  5'- cCCGGGcacgGCGAGcaCgGCGGCGCGCa -3'
miRNA:   3'- -GGCCCcacaUGCUCc-GgUGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 13324 0.71 0.197659
Target:  5'- uUCGGcacGGUGUACGGgcgcGGCacgaGCGGCGUGUc -3'
miRNA:   3'- -GGCC---CCACAUGCU----CCGg---UGCCGCGCG- -5'
26122 3' -61.3 NC_005342.2 + 47729 0.71 0.183003
Target:  5'- aUCGGcGGUGUGCGGcuGuGCUAcauCGGCGCGUu -3'
miRNA:   3'- -GGCC-CCACAUGCU--C-CGGU---GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.