Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26122 | 5' | -50.1 | NC_005342.2 | + | 37582 | 0.66 | 0.938617 |
Target: 5'- cGAGCccgaggccgGUGAGCGCUUCGgccugcucgcgauUCGcGCUcUCGg -3' miRNA: 3'- -CUCG---------CACUUGCGAAGC-------------AGCaUGA-AGC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 47791 | 0.66 | 0.937544 |
Target: 5'- uGGGCGcUGGugGUUUgugcucaugcgcgaUGUCGUGCUgcUCGg -3' miRNA: 3'- -CUCGC-ACUugCGAA--------------GCAGCAUGA--AGC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 11118 | 0.66 | 0.927947 |
Target: 5'- cGGCGUGAGCGCUUCGa--------- -3' miRNA: 3'- cUCGCACUUGCGAAGCagcaugaagc -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 6418 | 0.66 | 0.921898 |
Target: 5'- -cGCGgccGGGCGC--CGUCGUGCcgUCGg -3' miRNA: 3'- cuCGCa--CUUGCGaaGCAGCAUGa-AGC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 25601 | 0.67 | 0.887211 |
Target: 5'- -cGCGUGcGGCGCagguUUCGUCG-GCUUCc -3' miRNA: 3'- cuCGCAC-UUGCG----AAGCAGCaUGAAGc -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 30492 | 0.68 | 0.862986 |
Target: 5'- cAGCGUGAGCGCgg---CGgcCUUCGc -3' miRNA: 3'- cUCGCACUUGCGaagcaGCauGAAGC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 1820 | 0.68 | 0.862986 |
Target: 5'- aGAGCGUGcAgGCcggCGUCGUGCgguUCu -3' miRNA: 3'- -CUCGCACuUgCGaa-GCAGCAUGa--AGc -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 18175 | 0.71 | 0.723495 |
Target: 5'- cGGCGUGccgggugauGCGC-UCGUCGUGCgcgCGg -3' miRNA: 3'- cUCGCACu--------UGCGaAGCAGCAUGaa-GC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 40620 | 0.72 | 0.644358 |
Target: 5'- -uGCGUgcgcacuccaucGAGCGUUacUCGUCGUACUUCc -3' miRNA: 3'- cuCGCA------------CUUGCGA--AGCAGCAUGAAGc -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 36173 | 0.72 | 0.632909 |
Target: 5'- -cGCGcUGAugGCcgCGUCGUACUUgCGc -3' miRNA: 3'- cuCGC-ACUugCGaaGCAGCAUGAA-GC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 6103 | 0.76 | 0.425767 |
Target: 5'- cGGGCGUGAGCGUcaUGUCGUGCacCGg -3' miRNA: 3'- -CUCGCACUUGCGaaGCAGCAUGaaGC- -5' |
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26122 | 5' | -50.1 | NC_005342.2 | + | 507 | 1.09 | 0.003157 |
Target: 5'- cGAGCGUGAACGCUUCGUCGUACUUCGc -3' miRNA: 3'- -CUCGCACUUGCGAAGCAGCAUGAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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