miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26123 3' -57 NC_005342.2 + 46040 0.66 0.616608
Target:  5'- gUCGAAGAucgacugaacgagcgGGCGCCGUuaugcgCCGCu-GCGGa -3'
miRNA:   3'- aGGUUUCU---------------UCGCGGCA------GGCGucCGCC- -5'
26123 3' -57 NC_005342.2 + 41143 0.66 0.612237
Target:  5'- aUCGAAcAGGCGCUGcucgaCGCGGGCGa -3'
miRNA:   3'- aGGUUUcUUCGCGGCag---GCGUCCGCc -5'
26123 3' -57 NC_005342.2 + 17888 0.66 0.601325
Target:  5'- aUCCGAAccgcguGAAGCuguccGCCGgugcggCCGCGcgccuGGCGGg -3'
miRNA:   3'- -AGGUUU------CUUCG-----CGGCa-----GGCGU-----CCGCC- -5'
26123 3' -57 NC_005342.2 + 1596 0.66 0.601325
Target:  5'- aUCCGGGucgaAAGCGUCGUCgGC-GGCGu -3'
miRNA:   3'- -AGGUUUc---UUCGCGGCAGgCGuCCGCc -5'
26123 3' -57 NC_005342.2 + 14824 0.66 0.590438
Target:  5'- gCCGAucAGAAuGaCGCCGgagagcugCUGCAGGCGc -3'
miRNA:   3'- aGGUU--UCUU-C-GCGGCa-------GGCGUCCGCc -5'
26123 3' -57 NC_005342.2 + 47495 0.66 0.590438
Target:  5'- uUCCAGuacauGCuGCCGacaaUCGCGGGCGGc -3'
miRNA:   3'- -AGGUUucuu-CG-CGGCa---GGCGUCCGCC- -5'
26123 3' -57 NC_005342.2 + 29464 0.66 0.590438
Target:  5'- gUCCGucGgcGUGCCGgcaGC-GGCGGg -3'
miRNA:   3'- -AGGUuuCuuCGCGGCaggCGuCCGCC- -5'
26123 3' -57 NC_005342.2 + 33719 0.66 0.568778
Target:  5'- cUCGAAGgcGUGCCG-CCGCucggcucgaaagAGGCGc -3'
miRNA:   3'- aGGUUUCuuCGCGGCaGGCG------------UCCGCc -5'
26123 3' -57 NC_005342.2 + 39019 0.67 0.55802
Target:  5'- cCCGGGGcuGGCaGCCGaUUCGCucGGCGGc -3'
miRNA:   3'- aGGUUUCu-UCG-CGGC-AGGCGu-CCGCC- -5'
26123 3' -57 NC_005342.2 + 35743 0.67 0.55802
Target:  5'- gCUGAuGAAGCGCC--CUGCAGGUGa -3'
miRNA:   3'- aGGUUuCUUCGCGGcaGGCGUCCGCc -5'
26123 3' -57 NC_005342.2 + 5249 0.67 0.55802
Target:  5'- gCCAucGGucgagAGCGCCGcccgcucgUCCGCcGGCGa -3'
miRNA:   3'- aGGUuuCU-----UCGCGGC--------AGGCGuCCGCc -5'
26123 3' -57 NC_005342.2 + 12729 0.67 0.537747
Target:  5'- gCCAAuucgcacuuuacGUGCCGcUCGCAGGCGGc -3'
miRNA:   3'- aGGUUucuu--------CGCGGCaGGCGUCCGCC- -5'
26123 3' -57 NC_005342.2 + 1874 0.67 0.536687
Target:  5'- gUCCuAGGccGCGCCaaaUCCGCAG-CGGc -3'
miRNA:   3'- -AGGuUUCuuCGCGGc--AGGCGUCcGCC- -5'
26123 3' -57 NC_005342.2 + 30042 0.67 0.536687
Target:  5'- cCCGccAGgcGCGCgG-CCGCAccGGCGGa -3'
miRNA:   3'- aGGUu-UCuuCGCGgCaGGCGU--CCGCC- -5'
26123 3' -57 NC_005342.2 + 26767 0.67 0.536687
Target:  5'- cUCCGAAGuaaaaGCCGUCUGCcgacgaguAGGCGc -3'
miRNA:   3'- -AGGUUUCuucg-CGGCAGGCG--------UCCGCc -5'
26123 3' -57 NC_005342.2 + 23734 0.67 0.525074
Target:  5'- cCUggGGGcaAGCGCCGUUUuacggcgGcCAGGCGGc -3'
miRNA:   3'- aGGuuUCU--UCGCGGCAGG-------C-GUCCGCC- -5'
26123 3' -57 NC_005342.2 + 22377 0.67 0.515644
Target:  5'- gCCGAGGAuG-GCCGUCUGcCAGGuCGa -3'
miRNA:   3'- aGGUUUCUuCgCGGCAGGC-GUCC-GCc -5'
26123 3' -57 NC_005342.2 + 17156 0.67 0.505248
Target:  5'- gCCA----GGCGCCGaacCUGCAGGCGc -3'
miRNA:   3'- aGGUuucuUCGCGGCa--GGCGUCCGCc -5'
26123 3' -57 NC_005342.2 + 30395 0.68 0.474627
Target:  5'- gCCGuuc--GCGCCG-CCGCcGGCGGc -3'
miRNA:   3'- aGGUuucuuCGCGGCaGGCGuCCGCC- -5'
26123 3' -57 NC_005342.2 + 12104 0.68 0.474627
Target:  5'- gUUgAAGGuuGCGCCgGUCgCGCAGGCc- -3'
miRNA:   3'- -AGgUUUCuuCGCGG-CAG-GCGUCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.