Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26123 | 3' | -57 | NC_005342.2 | + | 11619 | 0.7 | 0.388027 |
Target: 5'- gUCGAAGuAGCGCUgccaguaGUCgCGCAGGCGc -3' miRNA: 3'- aGGUUUCuUCGCGG-------CAG-GCGUCCGCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 3916 | 0.73 | 0.244182 |
Target: 5'- aCCGGcAGGuuGGCGCCGuUCUGCAGGUaGGa -3' miRNA: 3'- aGGUU-UCU--UCGCGGC-AGGCGUCCG-CC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 42552 | 0.75 | 0.16408 |
Target: 5'- gUCCGAAGAAgcccGCGCCGcaUCUGCcagugagacggGGGCGGa -3' miRNA: 3'- -AGGUUUCUU----CGCGGC--AGGCG-----------UCCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 20514 | 0.77 | 0.128155 |
Target: 5'- gCCGccGccGCGCCGUUCGCuGGCGGc -3' miRNA: 3'- aGGUuuCuuCGCGGCAGGCGuCCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 39019 | 0.67 | 0.55802 |
Target: 5'- cCCGGGGcuGGCaGCCGaUUCGCucGGCGGc -3' miRNA: 3'- aGGUUUCu-UCG-CGGC-AGGCGu-CCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 30042 | 0.67 | 0.536687 |
Target: 5'- cCCGccAGgcGCGCgG-CCGCAccGGCGGa -3' miRNA: 3'- aGGUu-UCuuCGCGgCaGGCGU--CCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 46040 | 0.66 | 0.616608 |
Target: 5'- gUCGAAGAucgacugaacgagcgGGCGCCGUuaugcgCCGCu-GCGGa -3' miRNA: 3'- aGGUUUCU---------------UCGCGGCA------GGCGucCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 41143 | 0.66 | 0.612237 |
Target: 5'- aUCGAAcAGGCGCUGcucgaCGCGGGCGa -3' miRNA: 3'- aGGUUUcUUCGCGGCag---GCGUCCGCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 14824 | 0.66 | 0.590438 |
Target: 5'- gCCGAucAGAAuGaCGCCGgagagcugCUGCAGGCGc -3' miRNA: 3'- aGGUU--UCUU-C-GCGGCa-------GGCGUCCGCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 26767 | 0.67 | 0.536687 |
Target: 5'- cUCCGAAGuaaaaGCCGUCUGCcgacgaguAGGCGc -3' miRNA: 3'- -AGGUUUCuucg-CGGCAGGCG--------UCCGCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 30395 | 0.68 | 0.474627 |
Target: 5'- gCCGuuc--GCGCCG-CCGCcGGCGGc -3' miRNA: 3'- aGGUuucuuCGCGGCaGGCGuCCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 22377 | 0.67 | 0.515644 |
Target: 5'- gCCGAGGAuG-GCCGUCUGcCAGGuCGa -3' miRNA: 3'- aGGUUUCUuCgCGGCAGGC-GUCC-GCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 1596 | 0.66 | 0.601325 |
Target: 5'- aUCCGGGucgaAAGCGUCGUCgGC-GGCGu -3' miRNA: 3'- -AGGUUUc---UUCGCGGCAGgCGuCCGCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 9213 | 0.72 | 0.263667 |
Target: 5'- gCCGAacGGggGCGCCucgCCGCGuGCGGc -3' miRNA: 3'- aGGUU--UCuuCGCGGca-GGCGUcCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 17542 | 0.73 | 0.237957 |
Target: 5'- uUCCAGGacGAAGuUGCCG-CCGCcGGCGGc -3' miRNA: 3'- -AGGUUU--CUUC-GCGGCaGGCGuCCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 20706 | 0.72 | 0.263667 |
Target: 5'- gUCCGAAuacGAGGCGUCGg-CGCAGGCa- -3' miRNA: 3'- -AGGUUU---CUUCGCGGCagGCGUCCGcc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 35579 | 0.7 | 0.350875 |
Target: 5'- gCCGAAGGcggcgacacuggcGCGCCGggcggggCGCGGGCGGg -3' miRNA: 3'- aGGUUUCUu------------CGCGGCag-----GCGUCCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 41162 | 0.69 | 0.435307 |
Target: 5'- cCCGccGGAGUGCCG-CCGUugcgacAGGCGa -3' miRNA: 3'- aGGUuuCUUCGCGGCaGGCG------UCCGCc -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 47495 | 0.66 | 0.590438 |
Target: 5'- uUCCAGuacauGCuGCCGacaaUCGCGGGCGGc -3' miRNA: 3'- -AGGUUucuu-CG-CGGCa---GGCGUCCGCC- -5' |
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26123 | 3' | -57 | NC_005342.2 | + | 12729 | 0.67 | 0.537747 |
Target: 5'- gCCAAuucgcacuuuacGUGCCGcUCGCAGGCGGc -3' miRNA: 3'- aGGUUucuu--------CGCGGCaGGCGUCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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