miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26124 5' -57.1 NC_005342.2 + 21430 0.66 0.57366
Target:  5'- uGGGC-GGCgCAGGACGCGgaCGGaacUGUAc -3'
miRNA:   3'- gCCCGuUCG-GUCUUGCGCg-GCU---ACAU- -5'
26124 5' -57.1 NC_005342.2 + 3177 0.66 0.562725
Target:  5'- -cGGUGAGCCGGcccGGCGCGCCGc---- -3'
miRNA:   3'- gcCCGUUCGGUC---UUGCGCGGCuacau -5'
26124 5' -57.1 NC_005342.2 + 38299 0.66 0.530293
Target:  5'- gCGGGCAucgugaagcGCCAGcuacagccgGGCGCGCCGcUGc- -3'
miRNA:   3'- -GCCCGUu--------CGGUC---------UUGCGCGGCuACau -5'
26124 5' -57.1 NC_005342.2 + 30731 0.67 0.50275
Target:  5'- gCGGGCAGGCCGGcuuugccuugcaguAGCggcaguggucgcccGCGaCGAUGUAg -3'
miRNA:   3'- -GCCCGUUCGGUC--------------UUG--------------CGCgGCUACAU- -5'
26124 5' -57.1 NC_005342.2 + 44771 0.67 0.457652
Target:  5'- gGGGCGGGC---GGCGCGCCGGg--- -3'
miRNA:   3'- gCCCGUUCGgucUUGCGCGGCUacau -5'
26124 5' -57.1 NC_005342.2 + 10259 0.68 0.45167
Target:  5'- gCGGGCAGuGCUucgAGAauguucgccaccgugACGCGgCCGAUGUc -3'
miRNA:   3'- -GCCCGUU-CGG---UCU---------------UGCGC-GGCUACAu -5'
26124 5' -57.1 NC_005342.2 + 28621 0.68 0.447705
Target:  5'- uCGGcGCAGGCCGGcGCGUacuuGCCGucgGUGc -3'
miRNA:   3'- -GCC-CGUUCGGUCuUGCG----CGGCua-CAU- -5'
26124 5' -57.1 NC_005342.2 + 29891 0.68 0.437879
Target:  5'- aGGGCAccaAGCCGGAcuCGCGCaCGccGUu -3'
miRNA:   3'- gCCCGU---UCGGUCUu-GCGCG-GCuaCAu -5'
26124 5' -57.1 NC_005342.2 + 47804 0.68 0.437879
Target:  5'- aCGGGCAGuggacucgcGCCAG---GCGCCGAUcGUGu -3'
miRNA:   3'- -GCCCGUU---------CGGUCuugCGCGGCUA-CAU- -5'
26124 5' -57.1 NC_005342.2 + 9624 0.68 0.428177
Target:  5'- aCGGGCAccacGGgCAGcGGCGCGcCCGGcUGUAg -3'
miRNA:   3'- -GCCCGU----UCgGUC-UUGCGC-GGCU-ACAU- -5'
26124 5' -57.1 NC_005342.2 + 4059 0.68 0.409162
Target:  5'- cCGGGC-AGCCGGAACGUGaaGcaGUAg -3'
miRNA:   3'- -GCCCGuUCGGUCUUGCGCggCuaCAU- -5'
26124 5' -57.1 NC_005342.2 + 19024 0.69 0.399854
Target:  5'- gGGGCAacGGCUGGAACGaCGCC-AUGc- -3'
miRNA:   3'- gCCCGU--UCGGUCUUGC-GCGGcUACau -5'
26124 5' -57.1 NC_005342.2 + 10565 0.69 0.381649
Target:  5'- cCGGGCcGGCCGacGAgcgggucgggcGCGCGCuCGAUGa- -3'
miRNA:   3'- -GCCCGuUCGGU--CU-----------UGCGCG-GCUACau -5'
26124 5' -57.1 NC_005342.2 + 4605 0.7 0.346934
Target:  5'- uGGuGCAGGCCGGAcgcACGgGCCG-UGa- -3'
miRNA:   3'- gCC-CGUUCGGUCU---UGCgCGGCuACau -5'
26124 5' -57.1 NC_005342.2 + 39332 0.7 0.306804
Target:  5'- aCGaGCAAGCCGGGcgcCGCGCCGAg--- -3'
miRNA:   3'- -GCcCGUUCGGUCUu--GCGCGGCUacau -5'
26124 5' -57.1 NC_005342.2 + 42658 0.71 0.299217
Target:  5'- uGGGCucGCCGGGAUGCGCUGc---- -3'
miRNA:   3'- gCCCGuuCGGUCUUGCGCGGCuacau -5'
26124 5' -57.1 NC_005342.2 + 4634 0.73 0.20243
Target:  5'- aCGGGCAGGCCG--GCGCGCgGGUc-- -3'
miRNA:   3'- -GCCCGUUCGGUcuUGCGCGgCUAcau -5'
26124 5' -57.1 NC_005342.2 + 30103 0.74 0.181665
Target:  5'- uGGuGCcaaGGGCCAGAuucgaacuggcACGCGCCGAUGg- -3'
miRNA:   3'- gCC-CG---UUCGGUCU-----------UGCGCGGCUACau -5'
26124 5' -57.1 NC_005342.2 + 36149 0.78 0.095343
Target:  5'- cCGGcGCAAGCUGGAGCGCGCCGu---- -3'
miRNA:   3'- -GCC-CGUUCGGUCUUGCGCGGCuacau -5'
26124 5' -57.1 NC_005342.2 + 22825 0.8 0.067397
Target:  5'- uCGGGCAGGCCGcGAacguGCGCGCCGccGUGc -3'
miRNA:   3'- -GCCCGUUCGGU-CU----UGCGCGGCuaCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.