miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26125 3' -50.2 NC_005342.2 + 7455 0.66 0.942685
Target:  5'- gCCGc--GCGUcGAAgGCAAGGaCACGGc -3'
miRNA:   3'- -GGCacuUGCAcUUUgCGUUCC-GUGCC- -5'
26125 3' -50.2 NC_005342.2 + 13831 0.66 0.932038
Target:  5'- gCGUcGAGCGcauUGAGcgcgccgcgccGCGCGAagucggccGGCACGGg -3'
miRNA:   3'- gGCA-CUUGC---ACUU-----------UGCGUU--------CCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 13781 0.66 0.932038
Target:  5'- ---cGAAC-UGgcGCGCGAGGCGCa- -3'
miRNA:   3'- ggcaCUUGcACuuUGCGUUCCGUGcc -5'
26125 3' -50.2 NC_005342.2 + 21154 0.66 0.931475
Target:  5'- aCGUGAugGUGcgcuuCGCGcugccgcAGGC-CGGc -3'
miRNA:   3'- gGCACUugCACuuu--GCGU-------UCCGuGCC- -5'
26125 3' -50.2 NC_005342.2 + 9801 0.66 0.926278
Target:  5'- cCCGUccGCGUcgccuGAGCGCAugacGGGCACGu -3'
miRNA:   3'- -GGCAcuUGCAc----UUUGCGU----UCCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 30950 0.67 0.920226
Target:  5'- gCCGUuuGGGCG-GcGACGcCAAGGCagGCGGc -3'
miRNA:   3'- -GGCA--CUUGCaCuUUGC-GUUCCG--UGCC- -5'
26125 3' -50.2 NC_005342.2 + 42775 0.67 0.919605
Target:  5'- aCCGacgccGAACGUGAcgccgcacaucgaGACGCGAucaacgaguaucGGCGCGa -3'
miRNA:   3'- -GGCa----CUUGCACU-------------UUGCGUU------------CCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 20953 0.67 0.913884
Target:  5'- aCG-GGGCGgacGcAAACGCGcgcGGCGCGGg -3'
miRNA:   3'- gGCaCUUGCa--C-UUUGCGUu--CCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 41806 0.67 0.907252
Target:  5'- gUCGUGcugcgcgacgaGGCGUGu--CGCGAGGUGCGc -3'
miRNA:   3'- -GGCAC-----------UUGCACuuuGCGUUCCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 47908 0.67 0.907252
Target:  5'- aCGU--AUGUGAGGCGCGAGaaacgcGCACGu -3'
miRNA:   3'- gGCAcuUGCACUUUGCGUUC------CGUGCc -5'
26125 3' -50.2 NC_005342.2 + 31091 0.68 0.885651
Target:  5'- gCCGUGcucGGCGUc-GGCGC-AGGUGCGGc -3'
miRNA:   3'- -GGCAC---UUGCAcuUUGCGuUCCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 38326 0.68 0.885651
Target:  5'- gCCGUGAGCGcgucgGAcggcAACGCGucGCACa- -3'
miRNA:   3'- -GGCACUUGCa----CU----UUGCGUucCGUGcc -5'
26125 3' -50.2 NC_005342.2 + 46894 0.68 0.885651
Target:  5'- aCCGcUGAGCGgcagcauuucGAGCGCGaguAGGuCGCGGg -3'
miRNA:   3'- -GGC-ACUUGCac--------UUUGCGU---UCC-GUGCC- -5'
26125 3' -50.2 NC_005342.2 + 35203 0.68 0.877897
Target:  5'- gCCgGUGAGCGUGccGCcuGCGAgcGGCACGu -3'
miRNA:   3'- -GG-CACUUGCACuuUG--CGUU--CCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 18584 0.68 0.877897
Target:  5'- uUCGUGcaacaAACGaccGGCGCGgcAGGCGCGGg -3'
miRNA:   3'- -GGCAC-----UUGCacuUUGCGU--UCCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 5378 0.68 0.861595
Target:  5'- aCGgcGGCGUGAcgauccAGCGCgAAGGCGCGa -3'
miRNA:   3'- gGCacUUGCACU------UUGCG-UUCCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 17700 0.69 0.844283
Target:  5'- uUCGcGAACGUGucggccACgGCAccGGGCGCGGc -3'
miRNA:   3'- -GGCaCUUGCACuu----UG-CGU--UCCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 28234 0.69 0.844283
Target:  5'- aCgGUGAcCGUGAcGCGCAcgcGGCGCu- -3'
miRNA:   3'- -GgCACUuGCACUuUGCGUu--CCGUGcc -5'
26125 3' -50.2 NC_005342.2 + 317 0.69 0.832522
Target:  5'- aCCGUGAcCGUGcucggcGGCGUGAcgaccacaucgaacGGCACGGc -3'
miRNA:   3'- -GGCACUuGCACu-----UUGCGUU--------------CCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 33544 0.69 0.826032
Target:  5'- aUCGUGAACGUGAc-----GGGCACGa -3'
miRNA:   3'- -GGCACUUGCACUuugcguUCCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.