miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26125 3' -50.2 NC_005342.2 + 626 1.13 0.001907
Target:  5'- cCCGUGAACGUGAAACGCAAGGCACGGu -3'
miRNA:   3'- -GGCACUUGCACUUUGCGUUCCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 12386 0.8 0.286069
Target:  5'- aCCGUcgcGAACGUGAAugcgaacgucaacccGCGCGAGGCugGc -3'
miRNA:   3'- -GGCA---CUUGCACUU---------------UGCGUUCCGugCc -5'
26125 3' -50.2 NC_005342.2 + 32201 0.77 0.381986
Target:  5'- cUCGUcAGCGaGcuGCGCGAGGCGCGGg -3'
miRNA:   3'- -GGCAcUUGCaCuuUGCGUUCCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 28285 0.77 0.381986
Target:  5'- aCCGUGAcGCGcccgGAcGCGCAAGGCAaccaGGa -3'
miRNA:   3'- -GGCACU-UGCa---CUuUGCGUUCCGUg---CC- -5'
26125 3' -50.2 NC_005342.2 + 43959 0.77 0.40055
Target:  5'- gCCG-GAACGUGAAGCaGUAGGcGCGCGu -3'
miRNA:   3'- -GGCaCUUGCACUUUG-CGUUC-CGUGCc -5'
26125 3' -50.2 NC_005342.2 + 13826 0.77 0.419678
Target:  5'- -aGUGGACGUGAGcaacuacacgccGCGCGAGcggcGCGCGGc -3'
miRNA:   3'- ggCACUUGCACUU------------UGCGUUC----CGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 41725 0.76 0.43935
Target:  5'- uCgGUGcGCGUGAAGCGCGcGGCcaacgaGCGGg -3'
miRNA:   3'- -GgCACuUGCACUUUGCGUuCCG------UGCC- -5'
26125 3' -50.2 NC_005342.2 + 26259 0.73 0.600447
Target:  5'- uUCGcUGAACGUGAGGCaGUAuguGGCGCGc -3'
miRNA:   3'- -GGC-ACUUGCACUUUG-CGUu--CCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 38683 0.73 0.611721
Target:  5'- gCCGUGccgaucAGCGcGAAgcgGCGCGGGuGCGCGGa -3'
miRNA:   3'- -GGCAC------UUGCaCUU---UGCGUUC-CGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 42975 0.72 0.668163
Target:  5'- gCCaGUGAGaCG-GggGCGCAAGGgGCGc -3'
miRNA:   3'- -GG-CACUU-GCaCuuUGCGUUCCgUGCc -5'
26125 3' -50.2 NC_005342.2 + 30240 0.71 0.74426
Target:  5'- gCCGUGAcgucgACgGUGAAacagacgugGCGCGAGGCagucgcuACGGc -3'
miRNA:   3'- -GGCACU-----UG-CACUU---------UGCGUUCCG-------UGCC- -5'
26125 3' -50.2 NC_005342.2 + 41041 0.71 0.745331
Target:  5'- gCGaUGGACGUGAcGCGCGAGuguGUACGu -3'
miRNA:   3'- gGC-ACUUGCACUuUGCGUUC---CGUGCc -5'
26125 3' -50.2 NC_005342.2 + 2814 0.7 0.75597
Target:  5'- aCGgu--CGUGAcgAACGCGAccGGCACGGc -3'
miRNA:   3'- gGCacuuGCACU--UUGCGUU--CCGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 28662 0.7 0.770638
Target:  5'- aCCGUgcggcacgagcgcucGAGCGUGcagguuacGAACGCAGccGGCACGa -3'
miRNA:   3'- -GGCA---------------CUUGCAC--------UUUGCGUU--CCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 22527 0.7 0.776836
Target:  5'- uCCaGUaGAACGUGAuguugccgAGCGaCGAGcGCGCGGu -3'
miRNA:   3'- -GG-CA-CUUGCACU--------UUGC-GUUC-CGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 19490 0.69 0.806921
Target:  5'- gCGUGAACGU----CGCGGGuaGCGCGGc -3'
miRNA:   3'- gGCACUUGCAcuuuGCGUUC--CGUGCC- -5'
26125 3' -50.2 NC_005342.2 + 26649 0.69 0.806921
Target:  5'- cUCGUGAGCGUGAucGCGCc-GGCugcCGa -3'
miRNA:   3'- -GGCACUUGCACUu-UGCGuuCCGu--GCc -5'
26125 3' -50.2 NC_005342.2 + 22826 0.69 0.825096
Target:  5'- cUCGUGAACGUGAGcgauACGCccGGauuuuguCGCGGc -3'
miRNA:   3'- -GGCACUUGCACUU----UGCGuuCC-------GUGCC- -5'
26125 3' -50.2 NC_005342.2 + 33544 0.69 0.826032
Target:  5'- aUCGUGAACGUGAc-----GGGCACGa -3'
miRNA:   3'- -GGCACUUGCACUuugcguUCCGUGCc -5'
26125 3' -50.2 NC_005342.2 + 317 0.69 0.832522
Target:  5'- aCCGUGAcCGUGcucggcGGCGUGAcgaccacaucgaacGGCACGGc -3'
miRNA:   3'- -GGCACUuGCACu-----UUGCGUU--------------CCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.