miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26125 5' -59.6 NC_005342.2 + 20719 0.66 0.489714
Target:  5'- -gCGGUGAugacgGCGCGcgCGcUGCCGgacaUCGCc -3'
miRNA:   3'- gaGCCACU-----CGCGCuaGC-ACGGC----GGCG- -5'
26125 5' -59.6 NC_005342.2 + 35186 0.66 0.489714
Target:  5'- gUCGGcaccgucaacGGGCcgGUGAgCGUGCCGCCuGCg -3'
miRNA:   3'- gAGCCa---------CUCG--CGCUaGCACGGCGG-CG- -5'
26125 5' -59.6 NC_005342.2 + 15837 0.66 0.489714
Target:  5'- cCUUGuGcGAGCccGCGAgCGaGCCGCCGUg -3'
miRNA:   3'- -GAGC-CaCUCG--CGCUaGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 40490 0.66 0.488715
Target:  5'- -cCGGUGAcgaucGCgGCGAUCGgguugguguucuuUGCgGUCGCg -3'
miRNA:   3'- gaGCCACU-----CG-CGCUAGC-------------ACGgCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 38171 0.66 0.479765
Target:  5'- aUCcGUG-GCGCGAcgcgaugaUUGcGCUGCCGCa -3'
miRNA:   3'- gAGcCACuCGCGCU--------AGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 29598 0.66 0.479765
Target:  5'- gUCGGcGAagcgcuGCGCGAUCGgGCCaCgCGCg -3'
miRNA:   3'- gAGCCaCU------CGCGCUAGCaCGGcG-GCG- -5'
26125 5' -59.6 NC_005342.2 + 5289 0.66 0.479765
Target:  5'- uUCGGgucuuucGCGCcuucgcgcugGAUCGUcacGCCGCCGUg -3'
miRNA:   3'- gAGCCacu----CGCG----------CUAGCA---CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 27956 0.66 0.46017
Target:  5'- aCUCGGgaucgauguacGAGUauGCGAUCGUGCC-CUGa -3'
miRNA:   3'- -GAGCCa----------CUCG--CGCUAGCACGGcGGCg -5'
26125 5' -59.6 NC_005342.2 + 17447 0.66 0.46017
Target:  5'- -cCGGaUGuGGCGCaacgCGaagGCCGCCGCg -3'
miRNA:   3'- gaGCC-AC-UCGCGcua-GCa--CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 32447 0.66 0.46017
Target:  5'- -cCGGcGAgcagaacgucacGCGCaGGUCGcUGCCGCCGg -3'
miRNA:   3'- gaGCCaCU------------CGCG-CUAGC-ACGGCGGCg -5'
26125 5' -59.6 NC_005342.2 + 38005 0.66 0.46017
Target:  5'- aUCGaUGcacGCGCGAcCGUGCaCGCgGCg -3'
miRNA:   3'- gAGCcACu--CGCGCUaGCACG-GCGgCG- -5'
26125 5' -59.6 NC_005342.2 + 13957 0.66 0.450533
Target:  5'- -gCGGcuacGAuCGCGA-CG-GCCGCCGCg -3'
miRNA:   3'- gaGCCa---CUcGCGCUaGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 1768 0.66 0.444805
Target:  5'- -aCGGcguucGAGC-CGAUCGUcaguugcugaaugcuGCCGCCGUc -3'
miRNA:   3'- gaGCCa----CUCGcGCUAGCA---------------CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 44129 0.66 0.441008
Target:  5'- uCUCGGgcaGAuCGUGGUagcCGUGCugaCGCCGCa -3'
miRNA:   3'- -GAGCCa--CUcGCGCUA---GCACG---GCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 32733 0.66 0.441008
Target:  5'- aUCGGgaucGGCGuCGAUCGcuuUGagCGCCGCa -3'
miRNA:   3'- gAGCCac--UCGC-GCUAGC---ACg-GCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 28674 0.66 0.441008
Target:  5'- -gCGccGAGCGCGAcCGUGCgGCacgaGCg -3'
miRNA:   3'- gaGCcaCUCGCGCUaGCACGgCGg---CG- -5'
26125 5' -59.6 NC_005342.2 + 36839 0.66 0.441008
Target:  5'- cCUCcGUcauGuGCGCGAUCGcGCUGCUGUc -3'
miRNA:   3'- -GAGcCA---CuCGCGCUAGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 36080 0.67 0.428799
Target:  5'- aCUCGGgcGGCGCGuaucgcauggcgcaGgacucgCGUGUCGCUGCa -3'
miRNA:   3'- -GAGCCacUCGCGC--------------Ua-----GCACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 8648 0.67 0.413137
Target:  5'- -aCGGUGccgucggcguucAGCacgGCGAaCGUGCCGaCCGUg -3'
miRNA:   3'- gaGCCAC------------UCG---CGCUaGCACGGC-GGCG- -5'
26125 5' -59.6 NC_005342.2 + 19616 0.67 0.413137
Target:  5'- -aCGGcGAGCGCGGcgagCGcgGCCGaCGCu -3'
miRNA:   3'- gaGCCaCUCGCGCUa---GCa-CGGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.