miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26125 5' -59.6 NC_005342.2 + 663 1.1 0.000308
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 9245 0.77 0.083885
Target:  5'- gUCGGUGcGCaccGCGAUCGacacUGCCGUCGCg -3'
miRNA:   3'- gAGCCACuCG---CGCUAGC----ACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 26648 0.77 0.091184
Target:  5'- gCUC-GUGAGCGUGAUCGcGCCgGCUGCc -3'
miRNA:   3'- -GAGcCACUCGCGCUAGCaCGG-CGGCG- -5'
26125 5' -59.6 NC_005342.2 + 25210 0.75 0.120088
Target:  5'- aUCGGUGguaucgggcaGGcCGCGAaCGUGCgCGCCGCc -3'
miRNA:   3'- gAGCCAC----------UC-GCGCUaGCACG-GCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 41610 0.74 0.137557
Target:  5'- gCUCGcGgccGGGCGCcGUCGUGCCGUCGg -3'
miRNA:   3'- -GAGC-Ca--CUCGCGcUAGCACGGCGGCg -5'
26125 5' -59.6 NC_005342.2 + 36977 0.73 0.170398
Target:  5'- aCUCGGcaccgGcGCGCGucgugagcggCGUGUCGCCGCg -3'
miRNA:   3'- -GAGCCa----CuCGCGCua--------GCACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 20317 0.72 0.199465
Target:  5'- gUCGauGUGcGGCGCGAUCGUagGCCaGUCGCg -3'
miRNA:   3'- gAGC--CAC-UCGCGCUAGCA--CGG-CGGCG- -5'
26125 5' -59.6 NC_005342.2 + 38994 0.72 0.210075
Target:  5'- gCUCGGccgacggGAuGCGCGGgcCGUGCUGCCGg -3'
miRNA:   3'- -GAGCCa------CU-CGCGCUa-GCACGGCGGCg -5'
26125 5' -59.6 NC_005342.2 + 37593 0.72 0.210075
Target:  5'- -cCGGUGAGCGCu-UCG-GCCuGCuCGCg -3'
miRNA:   3'- gaGCCACUCGCGcuAGCaCGG-CG-GCG- -5'
26125 5' -59.6 NC_005342.2 + 47922 0.71 0.23874
Target:  5'- -gCGGUGcGCGCGccCGguUGCCGCCuGCg -3'
miRNA:   3'- gaGCCACuCGCGCuaGC--ACGGCGG-CG- -5'
26125 5' -59.6 NC_005342.2 + 39068 0.71 0.244234
Target:  5'- --gGGUGAGCagccaaccuGCGAUCGcggcgcgugcgccUGCCGgCCGCu -3'
miRNA:   3'- gagCCACUCG---------CGCUAGC-------------ACGGC-GGCG- -5'
26125 5' -59.6 NC_005342.2 + 18184 0.7 0.257463
Target:  5'- --gGGUGAuGCGCucGUCGUGCgCGCgGCa -3'
miRNA:   3'- gagCCACU-CGCGc-UAGCACG-GCGgCG- -5'
26125 5' -59.6 NC_005342.2 + 45439 0.7 0.257463
Target:  5'- uCUCGaGcccGGCGCGAaCGUGCCGaUCGCg -3'
miRNA:   3'- -GAGC-Cac-UCGCGCUaGCACGGC-GGCG- -5'
26125 5' -59.6 NC_005342.2 + 8933 0.7 0.277371
Target:  5'- aUCGcGUGcGCGggcugGAUCGUGCgGCCGUg -3'
miRNA:   3'- gAGC-CACuCGCg----CUAGCACGgCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 32035 0.69 0.291314
Target:  5'- gUCGGUcacGAGCGCGugcaCG-GCUGCCGg -3'
miRNA:   3'- gAGCCA---CUCGCGCua--GCaCGGCGGCg -5'
26125 5' -59.6 NC_005342.2 + 26471 0.69 0.291314
Target:  5'- aUCGucGUGAauGUGCGucgCGUGCCGCaCGCc -3'
miRNA:   3'- gAGC--CACU--CGCGCua-GCACGGCG-GCG- -5'
26125 5' -59.6 NC_005342.2 + 28842 0.69 0.305799
Target:  5'- --aGGUcGGCGCGAUCGUgGgCGgCGCa -3'
miRNA:   3'- gagCCAcUCGCGCUAGCA-CgGCgGCG- -5'
26125 5' -59.6 NC_005342.2 + 13876 0.69 0.313245
Target:  5'- -aCGGgcuGCGCGG-CG-GCCGUCGCg -3'
miRNA:   3'- gaGCCacuCGCGCUaGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 44307 0.69 0.313245
Target:  5'- gUCGGcGuGUGgGAgagcacCGUGCCGCUGCc -3'
miRNA:   3'- gAGCCaCuCGCgCUa-----GCACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 2679 0.69 0.328549
Target:  5'- -cCGGcGAGCGCGAugaaccgcgcggUCG-GCCuGUCGCg -3'
miRNA:   3'- gaGCCaCUCGCGCU------------AGCaCGG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.