miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26125 5' -59.6 NC_005342.2 + 663 1.1 0.000308
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 1768 0.66 0.444805
Target:  5'- -aCGGcguucGAGC-CGAUCGUcaguugcugaaugcuGCCGCCGUc -3'
miRNA:   3'- gaGCCa----CUCGcGCUAGCA---------------CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 2679 0.69 0.328549
Target:  5'- -cCGGcGAGCGCGAugaaccgcgcggUCG-GCCuGUCGCg -3'
miRNA:   3'- gaGCCaCUCGCGCU------------AGCaCGG-CGGCG- -5'
26125 5' -59.6 NC_005342.2 + 3176 0.68 0.369187
Target:  5'- -cCGGUGAGC-CGGccCG-GCgCGCCGCc -3'
miRNA:   3'- gaGCCACUCGcGCUa-GCaCG-GCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 4767 0.68 0.352527
Target:  5'- --gGGUGAGCccGCGAcgCGUGacgcucauaCGCCGCc -3'
miRNA:   3'- gagCCACUCG--CGCUa-GCACg--------GCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 4816 0.68 0.344398
Target:  5'- gUCGGcUGAccguacGCGCGcgcCGUGCCgauGCCGCu -3'
miRNA:   3'- gAGCC-ACU------CGCGCua-GCACGG---CGGCG- -5'
26125 5' -59.6 NC_005342.2 + 5289 0.66 0.479765
Target:  5'- uUCGGgucuuucGCGCcuucgcgcugGAUCGUcacGCCGCCGUg -3'
miRNA:   3'- gAGCCacu----CGCG----------CUAGCA---CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 8162 0.68 0.344398
Target:  5'- aCUCGGUGAGCgGCG-UCGaGacguuuugaaCGCUGCg -3'
miRNA:   3'- -GAGCCACUCG-CGCuAGCaCg---------GCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 8648 0.67 0.413137
Target:  5'- -aCGGUGccgucggcguucAGCacgGCGAaCGUGCCGaCCGUg -3'
miRNA:   3'- gaGCCAC------------UCG---CGCUaGCACGGC-GGCG- -5'
26125 5' -59.6 NC_005342.2 + 8933 0.7 0.277371
Target:  5'- aUCGcGUGcGCGggcugGAUCGUGCgGCCGUg -3'
miRNA:   3'- gAGC-CACuCGCg----CUAGCACGgCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 9245 0.77 0.083885
Target:  5'- gUCGGUGcGCaccGCGAUCGacacUGCCGUCGCg -3'
miRNA:   3'- gAGCCACuCG---CGCUAGC----ACGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 13876 0.69 0.313245
Target:  5'- -aCGGgcuGCGCGG-CG-GCCGUCGCg -3'
miRNA:   3'- gaGCCacuCGCGCUaGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 13957 0.66 0.450533
Target:  5'- -gCGGcuacGAuCGCGA-CG-GCCGCCGCg -3'
miRNA:   3'- gaGCCa---CUcGCGCUaGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 14289 0.68 0.344398
Target:  5'- gCUCGGcucgaaagaGGCGCGcgCGcacGCCGUCGCa -3'
miRNA:   3'- -GAGCCac-------UCGCGCuaGCa--CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 15837 0.66 0.489714
Target:  5'- cCUUGuGcGAGCccGCGAgCGaGCCGCCGUg -3'
miRNA:   3'- -GAGC-CaCUCG--CGCUaGCaCGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 16643 0.67 0.404091
Target:  5'- -cCGGUGcugcaccGCGCGGUgCGgaagcaCCGCCGCa -3'
miRNA:   3'- gaGCCACu------CGCGCUA-GCac----GGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 17447 0.66 0.46017
Target:  5'- -cCGGaUGuGGCGCaacgCGaagGCCGCCGCg -3'
miRNA:   3'- gaGCC-AC-UCGCGcua-GCa--CGGCGGCG- -5'
26125 5' -59.6 NC_005342.2 + 18184 0.7 0.257463
Target:  5'- --gGGUGAuGCGCucGUCGUGCgCGCgGCa -3'
miRNA:   3'- gagCCACU-CGCGc-UAGCACG-GCGgCG- -5'
26125 5' -59.6 NC_005342.2 + 19616 0.67 0.413137
Target:  5'- -aCGGcGAGCGCGGcgagCGcgGCCGaCGCu -3'
miRNA:   3'- gaGCCaCUCGCGCUa---GCa-CGGCgGCG- -5'
26125 5' -59.6 NC_005342.2 + 20317 0.72 0.199465
Target:  5'- gUCGauGUGcGGCGCGAUCGUagGCCaGUCGCg -3'
miRNA:   3'- gAGC--CAC-UCGCGCUAGCA--CGG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.