miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26126 3' -55 NC_005342.2 + 25864 0.65 0.702016
Target:  5'- aUCUGCaGCAGCgCUUgGugCgcGAGCg -3'
miRNA:   3'- -AGGUGaCGUCGgGAAgCugGaaCUCG- -5'
26126 3' -55 NC_005342.2 + 47160 0.65 0.700917
Target:  5'- --aGCUGCAGCCUugucggcuucgauUUCGGCUUUcGuGCg -3'
miRNA:   3'- aggUGACGUCGGG-------------AAGCUGGAA-CuCG- -5'
26126 3' -55 NC_005342.2 + 17506 0.66 0.690995
Target:  5'- aUCUGCUGCAGCCggUCGcACUguccgaAGCg -3'
miRNA:   3'- -AGGUGACGUCGGgaAGC-UGGaac---UCG- -5'
26126 3' -55 NC_005342.2 + 12158 0.66 0.690995
Target:  5'- gCCGCUucuucCGGCgucucauugCCUUCGACCUUGccGGCc -3'
miRNA:   3'- aGGUGAc----GUCG---------GGAAGCUGGAAC--UCG- -5'
26126 3' -55 NC_005342.2 + 162 0.66 0.679914
Target:  5'- gUCCACUGCccgugcGCCCgcCGGCUU--GGCu -3'
miRNA:   3'- -AGGUGACGu-----CGGGaaGCUGGAacUCG- -5'
26126 3' -55 NC_005342.2 + 41215 0.66 0.679914
Target:  5'- cCCGCgucgaGCAGCgCCUguUCGAUCaUGuGCg -3'
miRNA:   3'- aGGUGa----CGUCG-GGA--AGCUGGaACuCG- -5'
26126 3' -55 NC_005342.2 + 37507 0.66 0.657623
Target:  5'- cCCGCgGCAGCUUgcCGACaucGAGCa -3'
miRNA:   3'- aGGUGaCGUCGGGaaGCUGgaaCUCG- -5'
26126 3' -55 NC_005342.2 + 22287 0.66 0.657623
Target:  5'- gUCUcuUUGCGGCCCgucUCGGCaucGAGCa -3'
miRNA:   3'- -AGGu-GACGUCGGGa--AGCUGgaaCUCG- -5'
26126 3' -55 NC_005342.2 + 26866 0.66 0.646435
Target:  5'- -aCACUGCgAGCCCgaugUC-ACCUUcugccggaucGAGCa -3'
miRNA:   3'- agGUGACG-UCGGGa---AGcUGGAA----------CUCG- -5'
26126 3' -55 NC_005342.2 + 46076 0.67 0.635234
Target:  5'- gCCGCUGCGGaUUUggcgCGGCCUaggacagucggUGAGCa -3'
miRNA:   3'- aGGUGACGUCgGGAa---GCUGGA-----------ACUCG- -5'
26126 3' -55 NC_005342.2 + 38731 0.67 0.601653
Target:  5'- -gCGCUGCAGCUgUUCG-CCga-GGCa -3'
miRNA:   3'- agGUGACGUCGGgAAGCuGGaacUCG- -5'
26126 3' -55 NC_005342.2 + 41317 0.68 0.579385
Target:  5'- -gCACUGCGGCCCacgcgcucgcUCGugCUcuGGCg -3'
miRNA:   3'- agGUGACGUCGGGa---------AGCugGAacUCG- -5'
26126 3' -55 NC_005342.2 + 41935 0.68 0.568314
Target:  5'- -aCGCUGUuGCCC-UCGGgCgUGAGCg -3'
miRNA:   3'- agGUGACGuCGGGaAGCUgGaACUCG- -5'
26126 3' -55 NC_005342.2 + 38334 0.68 0.568314
Target:  5'- gCCGCUGCccgugguGCCCguucugaUCGGCCc-GGGCg -3'
miRNA:   3'- aGGUGACGu------CGGGa------AGCUGGaaCUCG- -5'
26126 3' -55 NC_005342.2 + 16563 0.68 0.557296
Target:  5'- aCCGCUcGCGGCCCga-GACagaGAGUg -3'
miRNA:   3'- aGGUGA-CGUCGGGaagCUGgaaCUCG- -5'
26126 3' -55 NC_005342.2 + 18572 0.68 0.546341
Target:  5'- gCCGCUGCAGCguCCgUCGGCgUgccGGCa -3'
miRNA:   3'- aGGUGACGUCG--GGaAGCUGgAac-UCG- -5'
26126 3' -55 NC_005342.2 + 18513 0.68 0.535456
Target:  5'- -aCGCUGCAGCggCCUUCGcaGCCggcGGCa -3'
miRNA:   3'- agGUGACGUCG--GGAAGC--UGGaacUCG- -5'
26126 3' -55 NC_005342.2 + 21091 0.69 0.471991
Target:  5'- -gCACUGCgcGGCCCUUCGucGCCcgUGAcgGCu -3'
miRNA:   3'- agGUGACG--UCGGGAAGC--UGGa-ACU--CG- -5'
26126 3' -55 NC_005342.2 + 45182 0.69 0.471991
Target:  5'- gCCAgguCUGCGGCCUUgcCGACCU--GGCg -3'
miRNA:   3'- aGGU---GACGUCGGGAa-GCUGGAacUCG- -5'
26126 3' -55 NC_005342.2 + 12911 0.7 0.461778
Target:  5'- -gCACUGCAgGCCCa--GGCCcagGAGCa -3'
miRNA:   3'- agGUGACGU-CGGGaagCUGGaa-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.