miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26126 5' -58 NC_005342.2 + 19962 0.66 0.509053
Target:  5'- aCGGCGCGGauGGCCcaGAGCuGCUgaGCGCg- -3'
miRNA:   3'- -GCCGCGUC--CUGG--CUUGuCGA--CGUGaa -5'
26126 5' -58 NC_005342.2 + 6801 0.66 0.508
Target:  5'- gCGGCacuccgGCGGGgcacucgucggcuACCG-GCGGCUGCGCa- -3'
miRNA:   3'- -GCCG------CGUCC-------------UGGCuUGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 32182 0.66 0.505897
Target:  5'- aGGCGCGGG-CCGAcaccgagaaccccgAC-GCgGCGCUg -3'
miRNA:   3'- gCCGCGUCCuGGCU--------------UGuCGaCGUGAa -5'
26126 5' -58 NC_005342.2 + 44167 0.66 0.498567
Target:  5'- aGcGCGCGccGCCGAGCAGC-GCACc- -3'
miRNA:   3'- gC-CGCGUccUGGCUUGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 15182 0.66 0.488179
Target:  5'- cCGGCaGCAGG-CCGGucagACGGCcGUACa- -3'
miRNA:   3'- -GCCG-CGUCCuGGCU----UGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 24437 0.66 0.488179
Target:  5'- aGGCcaGCAGcgccagcaaGACCGGGCuguuGCUGUACUg -3'
miRNA:   3'- gCCG--CGUC---------CUGGCUUGu---CGACGUGAa -5'
26126 5' -58 NC_005342.2 + 29908 0.66 0.488179
Target:  5'- gGcGCGCAGGGCaucuucCAGUUGCGCg- -3'
miRNA:   3'- gC-CGCGUCCUGgcuu--GUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 44799 0.66 0.477894
Target:  5'- -cGCGCGGucgagcGGCCGGACAGC-GCGCc- -3'
miRNA:   3'- gcCGCGUC------CUGGCUUGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 12429 0.66 0.477894
Target:  5'- uGGCGCGccGGGCgGGGCgcgGGCggGCGCUa -3'
miRNA:   3'- gCCGCGU--CCUGgCUUG---UCGa-CGUGAa -5'
26126 5' -58 NC_005342.2 + 30455 0.66 0.474829
Target:  5'- gCGGCGCgaacggcuucaugaAGGuGCuCGAGCAGC-GCACg- -3'
miRNA:   3'- -GCCGCG--------------UCC-UG-GCUUGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 25967 0.66 0.467717
Target:  5'- -aGCGCAGGGCggCGAagcGCGGCgcuugGCGCUc -3'
miRNA:   3'- gcCGCGUCCUG--GCU---UGUCGa----CGUGAa -5'
26126 5' -58 NC_005342.2 + 32123 0.66 0.467717
Target:  5'- uCGG-GCAGcGACCcGGCAGCcgUGCACg- -3'
miRNA:   3'- -GCCgCGUC-CUGGcUUGUCG--ACGUGaa -5'
26126 5' -58 NC_005342.2 + 7882 0.66 0.467717
Target:  5'- cCGGCGCAGGccgcgucgaucuGgCGAGCgAGCUGaACUa -3'
miRNA:   3'- -GCCGCGUCC------------UgGCUUG-UCGACgUGAa -5'
26126 5' -58 NC_005342.2 + 336 0.66 0.467717
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
26126 5' -58 NC_005342.2 + 23099 0.66 0.457652
Target:  5'- uCGGuUGCGucGGCUGAACAGCgGCGCUa -3'
miRNA:   3'- -GCC-GCGUc-CUGGCUUGUCGaCGUGAa -5'
26126 5' -58 NC_005342.2 + 1618 0.67 0.447705
Target:  5'- gCGGCGUAGccCUGAAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
26126 5' -58 NC_005342.2 + 16704 0.67 0.437879
Target:  5'- gCGGUGCAGcACCGGGCAggucgaaguGCUGuCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGU---------CGAC-GUGaa -5'
26126 5' -58 NC_005342.2 + 37811 0.67 0.437879
Target:  5'- gGGCGcCAGGuAUCGAACGGgUcggcGCACUg -3'
miRNA:   3'- gCCGC-GUCC-UGGCUUGUCgA----CGUGAa -5'
26126 5' -58 NC_005342.2 + 24667 0.67 0.418604
Target:  5'- aGGCuuguacGCGGcGCCGAuCAGCUGCAUg- -3'
miRNA:   3'- gCCG------CGUCcUGGCUuGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 43175 0.67 0.418604
Target:  5'- gCGGCuGCGGGACC--AUAGCgauUGCGCg- -3'
miRNA:   3'- -GCCG-CGUCCUGGcuUGUCG---ACGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.