miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26126 5' -58 NC_005342.2 + 4938 0.67 0.409162
Target:  5'- gGGCGCAauGGCCGAgccuuGCGGCaGCGCa- -3'
miRNA:   3'- gCCGCGUc-CUGGCU-----UGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 20672 0.67 0.409162
Target:  5'- aGGCGCAcGGgaugacGCCGGAUGGCgUGUACg- -3'
miRNA:   3'- gCCGCGU-CC------UGGCUUGUCG-ACGUGaa -5'
26126 5' -58 NC_005342.2 + 39470 0.67 0.409162
Target:  5'- uGGCGCAGGcagGCCGAcCAGgaaGCGCg- -3'
miRNA:   3'- gCCGCGUCC---UGGCUuGUCga-CGUGaa -5'
26126 5' -58 NC_005342.2 + 30490 0.67 0.399854
Target:  5'- aCGGCGCGGcGACCGucauGACGacguucgccauGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUC-CUGGC----UUGU-----------CGACGUGaa -5'
26126 5' -58 NC_005342.2 + 5934 0.67 0.398931
Target:  5'- aCGGUGCuGGACaacugcaUGGGCAGCgGCACc- -3'
miRNA:   3'- -GCCGCGuCCUG-------GCUUGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 38663 0.68 0.364005
Target:  5'- gCGGCGCGGGugCGcggacgGGCGGCguucguaugGCGCc- -3'
miRNA:   3'- -GCCGCGUCCugGC------UUGUCGa--------CGUGaa -5'
26126 5' -58 NC_005342.2 + 26612 0.68 0.364005
Target:  5'- cCGGCGCGGGcuCCGuGCAGUUcgccGCACc- -3'
miRNA:   3'- -GCCGCGUCCu-GGCuUGUCGA----CGUGaa -5'
26126 5' -58 NC_005342.2 + 47197 0.68 0.346934
Target:  5'- uCGGCGCGGGuguuucgacgACUGGcgcgcuggcgGCAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGUCC----------UGGCU----------UGUCGACGUgaa -5'
26126 5' -58 NC_005342.2 + 7487 0.69 0.322417
Target:  5'- aCGGCGUcGGGCCGucucguGCAGCUcuggGCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCu-----UGUCGA----CGUGaa -5'
26126 5' -58 NC_005342.2 + 36059 0.7 0.299217
Target:  5'- uGGCGCAGGACuCGcgUgucGCUGCAUg- -3'
miRNA:   3'- gCCGCGUCCUG-GCuuGu--CGACGUGaa -5'
26126 5' -58 NC_005342.2 + 9488 0.7 0.291776
Target:  5'- uGGCGCGcaagacGGcgaACCGGACGGCgUGCGCa- -3'
miRNA:   3'- gCCGCGU------CC---UGGCUUGUCG-ACGUGaa -5'
26126 5' -58 NC_005342.2 + 47844 0.7 0.291776
Target:  5'- aGGCGCAGGcggcaACCGGGCGcGC-GCACc- -3'
miRNA:   3'- gCCGCGUCC-----UGGCUUGU-CGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 28621 0.7 0.28376
Target:  5'- uCGGCGCAGGccggcgcguacuuGCCGucggugcGCAGCgGCGCg- -3'
miRNA:   3'- -GCCGCGUCC-------------UGGCu------UGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 9578 0.71 0.25674
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 30121 0.71 0.25674
Target:  5'- cCGGCGCcGGACCGAAUucGC-GCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCUUGu-CGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 5041 0.71 0.24372
Target:  5'- uCGGCGCGGcGCUGAACAGCgucaGCAg-- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGUCGa---CGUgaa -5'
26126 5' -58 NC_005342.2 + 6390 0.71 0.241815
Target:  5'- cCGGCGCAucguaaaaucgcgcGGugCGGucguccucACGGCUGCGCa- -3'
miRNA:   3'- -GCCGCGU--------------CCugGCU--------UGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 41456 0.71 0.237418
Target:  5'- uCGGCGCGGGcgacucgcgcGCCGGGCuaugGGuCUGCACg- -3'
miRNA:   3'- -GCCGCGUCC----------UGGCUUG----UC-GACGUGaa -5'
26126 5' -58 NC_005342.2 + 20728 0.71 0.237418
Target:  5'- aCGGCGCGcgcgcugccGGacaucGCCGAcGCGGCUGCGCg- -3'
miRNA:   3'- -GCCGCGU---------CC-----UGGCU-UGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 2328 0.72 0.207934
Target:  5'- aCGGCGCAcGACCugccgacggcGAACGcGCUGCGCUc -3'
miRNA:   3'- -GCCGCGUcCUGG----------CUUGU-CGACGUGAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.