miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26126 5' -58 NC_005342.2 + 336 0.66 0.467717
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
26126 5' -58 NC_005342.2 + 786 1.05 0.000735
Target:  5'- cCGGCGCAGGACCGAACAGCUGCACUUc -3'
miRNA:   3'- -GCCGCGUCCUGGCUUGUCGACGUGAA- -5'
26126 5' -58 NC_005342.2 + 1618 0.67 0.447705
Target:  5'- gCGGCGUAGccCUGAAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
26126 5' -58 NC_005342.2 + 2328 0.72 0.207934
Target:  5'- aCGGCGCAcGACCugccgacggcGAACGcGCUGCGCUc -3'
miRNA:   3'- -GCCGCGUcCUGG----------CUUGU-CGACGUGAa -5'
26126 5' -58 NC_005342.2 + 4938 0.67 0.409162
Target:  5'- gGGCGCAauGGCCGAgccuuGCGGCaGCGCa- -3'
miRNA:   3'- gCCGCGUc-CUGGCU-----UGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 5041 0.71 0.24372
Target:  5'- uCGGCGCGGcGCUGAACAGCgucaGCAg-- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGUCGa---CGUgaa -5'
26126 5' -58 NC_005342.2 + 5934 0.67 0.398931
Target:  5'- aCGGUGCuGGACaacugcaUGGGCAGCgGCACc- -3'
miRNA:   3'- -GCCGCGuCCUG-------GCUUGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 6390 0.71 0.241815
Target:  5'- cCGGCGCAucguaaaaucgcgcGGugCGGucguccucACGGCUGCGCa- -3'
miRNA:   3'- -GCCGCGU--------------CCugGCU--------UGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 6801 0.66 0.508
Target:  5'- gCGGCacuccgGCGGGgcacucgucggcuACCG-GCGGCUGCGCa- -3'
miRNA:   3'- -GCCG------CGUCC-------------UGGCuUGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 7487 0.69 0.322417
Target:  5'- aCGGCGUcGGGCCGucucguGCAGCUcuggGCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCu-----UGUCGA----CGUGaa -5'
26126 5' -58 NC_005342.2 + 7882 0.66 0.467717
Target:  5'- cCGGCGCAGGccgcgucgaucuGgCGAGCgAGCUGaACUa -3'
miRNA:   3'- -GCCGCGUCC------------UgGCUUG-UCGACgUGAa -5'
26126 5' -58 NC_005342.2 + 9488 0.7 0.291776
Target:  5'- uGGCGCGcaagacGGcgaACCGGACGGCgUGCGCa- -3'
miRNA:   3'- gCCGCGU------CC---UGGCUUGUCG-ACGUGaa -5'
26126 5' -58 NC_005342.2 + 9578 0.71 0.25674
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 9677 0.73 0.176777
Target:  5'- gGGCGCAGGcgcGCCGccGGCAGCcggUGCGCa- -3'
miRNA:   3'- gCCGCGUCC---UGGC--UUGUCG---ACGUGaa -5'
26126 5' -58 NC_005342.2 + 12429 0.66 0.477894
Target:  5'- uGGCGCGccGGGCgGGGCgcgGGCggGCGCUa -3'
miRNA:   3'- gCCGCGU--CCUGgCUUG---UCGa-CGUGAa -5'
26126 5' -58 NC_005342.2 + 13620 0.72 0.191801
Target:  5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3'
miRNA:   3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5'
26126 5' -58 NC_005342.2 + 15182 0.66 0.488179
Target:  5'- cCGGCaGCAGG-CCGGucagACGGCcGUACa- -3'
miRNA:   3'- -GCCG-CGUCCuGGCU----UGUCGaCGUGaa -5'
26126 5' -58 NC_005342.2 + 16704 0.67 0.437879
Target:  5'- gCGGUGCAGcACCGGGCAggucgaaguGCUGuCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGU---------CGAC-GUGaa -5'
26126 5' -58 NC_005342.2 + 19962 0.66 0.509053
Target:  5'- aCGGCGCGGauGGCCcaGAGCuGCUgaGCGCg- -3'
miRNA:   3'- -GCCGCGUC--CUGG--CUUGuCGA--CGUGaa -5'
26126 5' -58 NC_005342.2 + 20576 0.76 0.116397
Target:  5'- aCGGCGCGGcggcGGCCGGcaGCGGUUGCGCg- -3'
miRNA:   3'- -GCCGCGUC----CUGGCU--UGUCGACGUGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.