miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26127 3' -56.2 NC_005342.2 + 21207 0.66 0.584603
Target:  5'- ---aUCACGUCa-AGUUGCGCGCGc- -3'
miRNA:   3'- uucaAGUGCAGcgUCAGCGCGCGCuu -5'
26127 3' -56.2 NC_005342.2 + 26316 0.66 0.581264
Target:  5'- -cGUUCAgCGaaGCAGUCGCGUggaugagcugaaccGCGAAa -3'
miRNA:   3'- uuCAAGU-GCagCGUCAGCGCG--------------CGCUU- -5'
26127 3' -56.2 NC_005342.2 + 17473 0.66 0.562419
Target:  5'- -cGUcagCGCGUCGUGGcCGCGCuguGCGAGc -3'
miRNA:   3'- uuCAa--GUGCAGCGUCaGCGCG---CGCUU- -5'
26127 3' -56.2 NC_005342.2 + 44137 0.67 0.540468
Target:  5'- cGGGUUCGC-UUGcCGG-CGCGUGCGAGg -3'
miRNA:   3'- -UUCAAGUGcAGC-GUCaGCGCGCGCUU- -5'
26127 3' -56.2 NC_005342.2 + 2867 0.67 0.528518
Target:  5'- -cGUUCACGUCGCcggacuucguAGUCGCcuacgacGCGCu-- -3'
miRNA:   3'- uuCAAGUGCAGCG----------UCAGCG-------CGCGcuu -5'
26127 3' -56.2 NC_005342.2 + 2254 0.67 0.518813
Target:  5'- -cGUUCGcCGUCGgcaGGUCGUGCGCc-- -3'
miRNA:   3'- uuCAAGU-GCAGCg--UCAGCGCGCGcuu -5'
26127 3' -56.2 NC_005342.2 + 30917 0.67 0.518813
Target:  5'- ----aCGCGuUCGCcgGGcUCGCGCGCGAGc -3'
miRNA:   3'- uucaaGUGC-AGCG--UC-AGCGCGCGCUU- -5'
26127 3' -56.2 NC_005342.2 + 30806 0.67 0.507049
Target:  5'- cAGGUUCGgcgccuggccCGUCaGCGGcgcgagcugcugcUCGCGCGCGAGc -3'
miRNA:   3'- -UUCAAGU----------GCAG-CGUC-------------AGCGCGCGCUU- -5'
26127 3' -56.2 NC_005342.2 + 45444 0.68 0.466321
Target:  5'- uAGGUgCAUG-CGCAGcgCGCGCGCGu- -3'
miRNA:   3'- -UUCAaGUGCaGCGUCa-GCGCGCGCuu -5'
26127 3' -56.2 NC_005342.2 + 39425 0.68 0.466321
Target:  5'- gAAGUUCGCGUCcggcaGCAGUCGgcCGCuaGGAu -3'
miRNA:   3'- -UUCAAGUGCAG-----CGUCAGC--GCGcgCUU- -5'
26127 3' -56.2 NC_005342.2 + 19555 0.68 0.436175
Target:  5'- cGGUcgCACGgucggCGCGGcacaaggggaaUCGCGCGCGAu -3'
miRNA:   3'- uUCAa-GUGCa----GCGUC-----------AGCGCGCGCUu -5'
26127 3' -56.2 NC_005342.2 + 11281 0.69 0.416713
Target:  5'- -uGcgC-CGUCGCcuuguugcacuGGUCGCGCGCGAu -3'
miRNA:   3'- uuCaaGuGCAGCG-----------UCAGCGCGCGCUu -5'
26127 3' -56.2 NC_005342.2 + 25764 0.69 0.407183
Target:  5'- cGGgacgUugGUCGUGGUCauGCGCGCGAu -3'
miRNA:   3'- uUCaa--GugCAGCGUCAG--CGCGCGCUu -5'
26127 3' -56.2 NC_005342.2 + 30215 0.69 0.388539
Target:  5'- -cGUggCGCGagGCAGUCgcuacgGCGCGCGAAu -3'
miRNA:   3'- uuCAa-GUGCagCGUCAG------CGCGCGCUU- -5'
26127 3' -56.2 NC_005342.2 + 33197 0.7 0.370465
Target:  5'- cGGUUCgGCG-CGCAGUCGCcGCGCc-- -3'
miRNA:   3'- uUCAAG-UGCaGCGUCAGCG-CGCGcuu -5'
26127 3' -56.2 NC_005342.2 + 1172 0.7 0.369576
Target:  5'- ---gUCGCG-CGCAGcacggcaccgacuUCGCGCGCGAc -3'
miRNA:   3'- uucaAGUGCaGCGUC-------------AGCGCGCGCUu -5'
26127 3' -56.2 NC_005342.2 + 11252 0.7 0.361645
Target:  5'- cGAGUUCGCGUUGC---CGCGCGCu-- -3'
miRNA:   3'- -UUCAAGUGCAGCGucaGCGCGCGcuu -5'
26127 3' -56.2 NC_005342.2 + 47460 0.7 0.344448
Target:  5'- -cGUUCACGcUCGCcggcacGUCGCGCGCc-- -3'
miRNA:   3'- uuCAAGUGC-AGCGu-----CAGCGCGCGcuu -5'
26127 3' -56.2 NC_005342.2 + 32408 0.71 0.311846
Target:  5'- cGAGUgcaUCaACGUCGaAGcCGCGCGCGAAu -3'
miRNA:   3'- -UUCA---AG-UGCAGCgUCaGCGCGCGCUU- -5'
26127 3' -56.2 NC_005342.2 + 3061 0.71 0.288969
Target:  5'- gAAGUUCGCG-CGCuacGUCGCG-GCGGAc -3'
miRNA:   3'- -UUCAAGUGCaGCGu--CAGCGCgCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.