miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26127 5' -55.9 NC_005342.2 + 11960 0.66 0.609747
Target:  5'- gGC-GCGCGCGcCGcUGCGCaUGCcgGg -3'
miRNA:   3'- aCGaCGCGCGCuGCaACGUG-ACGuaU- -5'
26127 5' -55.9 NC_005342.2 + 19788 0.66 0.609747
Target:  5'- gUGCcGCGCGUugaguGCGaUGCGCUGCu-- -3'
miRNA:   3'- -ACGaCGCGCGc----UGCaACGUGACGuau -5'
26127 5' -55.9 NC_005342.2 + 28705 0.66 0.609747
Target:  5'- aGCUGCGCGgccgccggauCGGCGUgUGCGucGCGUGc -3'
miRNA:   3'- aCGACGCGC----------GCUGCA-ACGUgaCGUAU- -5'
26127 5' -55.9 NC_005342.2 + 29582 0.66 0.609747
Target:  5'- aGC-GCGCGCGguagucgucgGCGaaGCGCUGCGc- -3'
miRNA:   3'- aCGaCGCGCGC----------UGCaaCGUGACGUau -5'
26127 5' -55.9 NC_005342.2 + 47015 0.66 0.598469
Target:  5'- gGCgaagUGCGCGCGAaUGcUGCGCcGCAa- -3'
miRNA:   3'- aCG----ACGCGCGCU-GCaACGUGaCGUau -5'
26127 5' -55.9 NC_005342.2 + 44398 0.66 0.598469
Target:  5'- cUGCU-CGCGCGGCGgcagcgGCACggUGCu-- -3'
miRNA:   3'- -ACGAcGCGCGCUGCaa----CGUG--ACGuau -5'
26127 5' -55.9 NC_005342.2 + 12044 0.66 0.598469
Target:  5'- aGCUGC-CGCaucCGUUGCACcGCGa- -3'
miRNA:   3'- aCGACGcGCGcu-GCAACGUGaCGUau -5'
26127 5' -55.9 NC_005342.2 + 44585 0.66 0.597342
Target:  5'- cGCcGCGCGCGACaaccUGCccgacucGCUGCGc- -3'
miRNA:   3'- aCGaCGCGCGCUGca--ACG-------UGACGUau -5'
26127 5' -55.9 NC_005342.2 + 17454 0.66 0.587221
Target:  5'- cGCUGUGCGagcaGuuCGaUGCGCUGCu-- -3'
miRNA:   3'- aCGACGCGCg---Cu-GCaACGUGACGuau -5'
26127 5' -55.9 NC_005342.2 + 2725 0.66 0.587221
Target:  5'- cGCcGCcgGCGCGACGcUGCagGCUGCcgGu -3'
miRNA:   3'- aCGaCG--CGCGCUGCaACG--UGACGuaU- -5'
26127 5' -55.9 NC_005342.2 + 47795 0.66 0.583854
Target:  5'- cGCUGgugguuugugcucaUGCGCGAUGUcGUGCUGCu-- -3'
miRNA:   3'- aCGAC--------------GCGCGCUGCAaCGUGACGuau -5'
26127 5' -55.9 NC_005342.2 + 11260 0.66 0.576013
Target:  5'- cGUUGcCGCGCGcUGUUGaACUGCGc- -3'
miRNA:   3'- aCGAC-GCGCGCuGCAACgUGACGUau -5'
26127 5' -55.9 NC_005342.2 + 35985 0.66 0.576013
Target:  5'- aUGCaGCGacaCGCGACGUccUGCGCcaUGCGa- -3'
miRNA:   3'- -ACGaCGC---GCGCUGCA--ACGUG--ACGUau -5'
26127 5' -55.9 NC_005342.2 + 31019 0.66 0.576013
Target:  5'- cGCUGCgccGCGCGGCcGUcGCGaccgGCAUGa -3'
miRNA:   3'- aCGACG---CGCGCUG-CAaCGUga--CGUAU- -5'
26127 5' -55.9 NC_005342.2 + 44060 0.66 0.564854
Target:  5'- cGUUGUGCGCGACGaacagGCcgccACUGUg-- -3'
miRNA:   3'- aCGACGCGCGCUGCaa---CG----UGACGuau -5'
26127 5' -55.9 NC_005342.2 + 4157 0.66 0.564854
Target:  5'- gUGCUGCa-GCGGCGUgUGCuuCUGCGc- -3'
miRNA:   3'- -ACGACGcgCGCUGCA-ACGu-GACGUau -5'
26127 5' -55.9 NC_005342.2 + 36973 0.67 0.532846
Target:  5'- gGCaccgGCGCGCGuCGUgagcggcgugucgccGCGCUGCGg- -3'
miRNA:   3'- aCGa---CGCGCGCuGCAa--------------CGUGACGUau -5'
26127 5' -55.9 NC_005342.2 + 9489 0.67 0.530661
Target:  5'- cGCUGCGUGCGccugcGCGUuuUGCucgacgaGCUGCu-- -3'
miRNA:   3'- aCGACGCGCGC-----UGCA--ACG-------UGACGuau -5'
26127 5' -55.9 NC_005342.2 + 41809 0.67 0.520871
Target:  5'- gUGCUGCGCGacgaGGCGUgucgcgaggUGCGCcaguugccggUGCAc- -3'
miRNA:   3'- -ACGACGCGCg---CUGCA---------ACGUG----------ACGUau -5'
26127 5' -55.9 NC_005342.2 + 3280 0.67 0.499379
Target:  5'- --gUGCGCGCGGCGgcGCGCgGUu-- -3'
miRNA:   3'- acgACGCGCGCUGCaaCGUGaCGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.