miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26129 5' -54.8 NC_005342.2 + 13999 0.66 0.673637
Target:  5'- gGC-CGCCGGccCGAagucgccaaggcGGCCGCGUUGg- -3'
miRNA:   3'- aCGcGCGGUUu-GCU------------UCGGCGCAACaa -5'
26129 5' -54.8 NC_005342.2 + 18272 0.66 0.673637
Target:  5'- gGCGCGUauuGCGAuGCCGCGc---- -3'
miRNA:   3'- aCGCGCGguuUGCUuCGGCGCaacaa -5'
26129 5' -54.8 NC_005342.2 + 30103 0.66 0.673637
Target:  5'- cGCGCGCCuGGCG-GGUgGCGUcgcagGUg -3'
miRNA:   3'- aCGCGCGGuUUGCuUCGgCGCAa----CAa -5'
26129 5' -54.8 NC_005342.2 + 3888 0.66 0.673637
Target:  5'- --aGCGCCAGGCGGcAGCgGCGg---- -3'
miRNA:   3'- acgCGCGGUUUGCU-UCGgCGCaacaa -5'
26129 5' -54.8 NC_005342.2 + 33179 0.66 0.672512
Target:  5'- gGCGCGCCGGGCGAuccagaguugaguGGgCGUcUUGg- -3'
miRNA:   3'- aCGCGCGGUUUGCU-------------UCgGCGcAACaa -5'
26129 5' -54.8 NC_005342.2 + 38684 0.66 0.662367
Target:  5'- gGcCGUGCCGAucagcGCGAAGCgGCGcggGUg -3'
miRNA:   3'- aC-GCGCGGUU-----UGCUUCGgCGCaa-CAa -5'
26129 5' -54.8 NC_005342.2 + 20969 0.66 0.661238
Target:  5'- cUGCGCGCCAAguagcacGCGcugcGCCGgGcUUGUc -3'
miRNA:   3'- -ACGCGCGGUU-------UGCuu--CGGCgC-AACAa -5'
26129 5' -54.8 NC_005342.2 + 29548 0.66 0.658979
Target:  5'- gGCGCGCCGccggucgacuggucAuucgcgGCGAAGCgCGCGcgGUa -3'
miRNA:   3'- aCGCGCGGU--------------U------UGCUUCG-GCGCaaCAa -5'
26129 5' -54.8 NC_005342.2 + 46632 0.66 0.639747
Target:  5'- cUGCaGCGCC--GCGAGcGCCGCGa---- -3'
miRNA:   3'- -ACG-CGCGGuuUGCUU-CGGCGCaacaa -5'
26129 5' -54.8 NC_005342.2 + 14358 0.66 0.639747
Target:  5'- --aGCGgCGAACGgcGCCGCGcUGa- -3'
miRNA:   3'- acgCGCgGUUUGCuuCGGCGCaACaa -5'
26129 5' -54.8 NC_005342.2 + 15451 0.66 0.628421
Target:  5'- gGCGUGCCGAGCGcaacaGGGCUGCu----- -3'
miRNA:   3'- aCGCGCGGUUUGC-----UUCGGCGcaacaa -5'
26129 5' -54.8 NC_005342.2 + 38056 0.67 0.617098
Target:  5'- gGUGUGCCGAcCGAAGCCGaacUGa- -3'
miRNA:   3'- aCGCGCGGUUuGCUUCGGCgcaACaa -5'
26129 5' -54.8 NC_005342.2 + 17469 0.67 0.605789
Target:  5'- aGCGCGUCGu----GGCCGCGcUGUg -3'
miRNA:   3'- aCGCGCGGUuugcuUCGGCGCaACAa -5'
26129 5' -54.8 NC_005342.2 + 20833 0.67 0.594504
Target:  5'- gGCGUGUCGAcguucaggcGCGcAGCCGCGUcGg- -3'
miRNA:   3'- aCGCGCGGUU---------UGCuUCGGCGCAaCaa -5'
26129 5' -54.8 NC_005342.2 + 1350 0.67 0.594504
Target:  5'- gGCG-GCCuuGAACGAacgcaugaAGCCGCGcUUGUa -3'
miRNA:   3'- aCGCgCGG--UUUGCU--------UCGGCGC-AACAa -5'
26129 5' -54.8 NC_005342.2 + 31074 0.67 0.583253
Target:  5'- cGC-UGCCGAGCGAcgcAGCCGCGc-GUUu -3'
miRNA:   3'- aCGcGCGGUUUGCU---UCGGCGCaaCAA- -5'
26129 5' -54.8 NC_005342.2 + 1250 0.67 0.572046
Target:  5'- gGCGCGCC--GCcuGGCgCGCGUUGc- -3'
miRNA:   3'- aCGCGCGGuuUGcuUCG-GCGCAACaa -5'
26129 5' -54.8 NC_005342.2 + 47220 0.67 0.572046
Target:  5'- -aCGCGCCGgcGGCGAcuGCCGCGcUGa- -3'
miRNA:   3'- acGCGCGGU--UUGCUu-CGGCGCaACaa -5'
26129 5' -54.8 NC_005342.2 + 26445 0.68 0.560889
Target:  5'- gGCGUGCCGAccu-GGCCGCcUUGUg -3'
miRNA:   3'- aCGCGCGGUUugcuUCGGCGcAACAa -5'
26129 5' -54.8 NC_005342.2 + 1316 0.68 0.560889
Target:  5'- cGCGCGCCAGGCGGcgcgccaaggAGCaCGUcaugccGUUGa- -3'
miRNA:   3'- aCGCGCGGUUUGCU----------UCG-GCG------CAACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.