Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2613 | 3' | -54.5 | NC_001488.1 | + | 1212 | 1.13 | 0.000048 |
Target: 5'- uCCCUAUCUUACAUCCCCCAGGAGCCCc -3' miRNA: 3'- -GGGAUAGAAUGUAGGGGGUCCUCGGG- -5' |
|||||||
2613 | 3' | -54.5 | NC_001488.1 | + | 1286 | 0.68 | 0.174853 |
Target: 5'- gCCUguaaGUCUUuCAUCUgCCAGG-GCCUa -3' miRNA: 3'- gGGA----UAGAAuGUAGGgGGUCCuCGGG- -5' |
|||||||
2613 | 3' | -54.5 | NC_001488.1 | + | 6833 | 0.66 | 0.236556 |
Target: 5'- aCCCUgaagcaaGUCacaaaaccCAUCaaaaCCCAGGAGUCCu -3' miRNA: 3'- -GGGA-------UAGaau-----GUAGg---GGGUCCUCGGG- -5' |
|||||||
2613 | 3' | -54.5 | NC_001488.1 | + | 1711 | 0.66 | 0.25933 |
Target: 5'- gCCC-AUCUUACGUUCCCUAGcGuacucaaacGCCa -3' miRNA: 3'- -GGGaUAGAAUGUAGGGGGUC-Cu--------CGGg -5' |
|||||||
2613 | 3' | -54.5 | NC_001488.1 | + | 2756 | 0.66 | 0.25933 |
Target: 5'- aCCCUcaccUCU--CcUUCCCCAGG-GCCCc -3' miRNA: 3'- -GGGAu---AGAauGuAGGGGGUCCuCGGG- -5' |
|||||||
2613 | 3' | -54.5 | NC_001488.1 | + | 6387 | 0.66 | 0.274953 |
Target: 5'- aUgUAUC---CGUCCUCCAGGAacgGCCCc -3' miRNA: 3'- gGgAUAGaauGUAGGGGGUCCU---CGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home