miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26130 3' -53.9 NC_005342.2 + 34815 0.66 0.773159
Target:  5'- cAGCGCGucacgccGAUGGUguucggcgcgacCGGCAAUggUACGGCa -3'
miRNA:   3'- -UUGCGCu------CUGCUA------------GCCGUUA--GUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 23701 0.66 0.773159
Target:  5'- aAAC-CGAG-CGAUUGGCucgCGCGGg -3'
miRNA:   3'- -UUGcGCUCuGCUAGCCGuuaGUGCCg -5'
26130 3' -53.9 NC_005342.2 + 45165 0.66 0.773159
Target:  5'- -uCGCGAGcAUGG-CGGCcAAcUACGGCg -3'
miRNA:   3'- uuGCGCUC-UGCUaGCCG-UUaGUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 31955 0.66 0.773159
Target:  5'- -uCGCGGauauCGGUUGGCAGcaGCGGCc -3'
miRNA:   3'- uuGCGCUcu--GCUAGCCGUUagUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 30332 0.66 0.773159
Target:  5'- gGACGCcAGGuCGugcagcagcgCGGCAAggCGCGGCg -3'
miRNA:   3'- -UUGCGcUCU-GCua--------GCCGUUa-GUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 12429 0.66 0.773159
Target:  5'- uGGCGCGccGGGCGGggcgCgGGCGGgcgcUACGGCg -3'
miRNA:   3'- -UUGCGC--UCUGCUa---G-CCGUUa---GUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 24102 0.66 0.762821
Target:  5'- gAGCGCGuuGAuCGA-CGGaCAGUCGCaGCg -3'
miRNA:   3'- -UUGCGCu-CU-GCUaGCC-GUUAGUGcCG- -5'
26130 3' -53.9 NC_005342.2 + 22941 0.66 0.762821
Target:  5'- gAGCGCcAGuACGAUCGcGCcGAUCGCcgGGCc -3'
miRNA:   3'- -UUGCGcUC-UGCUAGC-CG-UUAGUG--CCG- -5'
26130 3' -53.9 NC_005342.2 + 18255 0.66 0.762821
Target:  5'- cGCGCGcacGACGAgcgcaucaccCGGCAcgC-CGGCa -3'
miRNA:   3'- uUGCGCu--CUGCUa---------GCCGUuaGuGCCG- -5'
26130 3' -53.9 NC_005342.2 + 39417 0.66 0.762821
Target:  5'- uGCGCcacuGACGAcaagcgaccUCGGCAAgcuCGGCa -3'
miRNA:   3'- uUGCGcu--CUGCU---------AGCCGUUaguGCCG- -5'
26130 3' -53.9 NC_005342.2 + 8072 0.66 0.759692
Target:  5'- --gGCGAGuCGAagaaaGGCGacuggacgacgcugGUCGCGGCg -3'
miRNA:   3'- uugCGCUCuGCUag---CCGU--------------UAGUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 29886 0.66 0.759692
Target:  5'- uGCGCGGGucGCGcaucgacgcguuccGUCGGCGc-UACGGCa -3'
miRNA:   3'- uUGCGCUC--UGC--------------UAGCCGUuaGUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 6383 0.66 0.752344
Target:  5'- cACGCGcauGCGGUCGuGCcg-UACGGCa -3'
miRNA:   3'- uUGCGCuc-UGCUAGC-CGuuaGUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 2351 0.66 0.741738
Target:  5'- cGACGCGGcguagcccauGACGGcgcCGGCGGUCGCcuGGUc -3'
miRNA:   3'- -UUGCGCU----------CUGCUa--GCCGUUAGUG--CCG- -5'
26130 3' -53.9 NC_005342.2 + 44813 0.66 0.741738
Target:  5'- gGACuGCGAGGCGAuacUCGacGCcugucugCGCGGCg -3'
miRNA:   3'- -UUG-CGCUCUGCU---AGC--CGuua----GUGCCG- -5'
26130 3' -53.9 NC_005342.2 + 15459 0.66 0.741738
Target:  5'- gAGCGCaacaGGGCugcucgCGGCGGUCAcCGGCg -3'
miRNA:   3'- -UUGCGc---UCUGcua---GCCGUUAGU-GCCG- -5'
26130 3' -53.9 NC_005342.2 + 32322 0.66 0.741738
Target:  5'- cGACGCGAGcgcgccgcGCGAcgUCGGCAAacgcuUC-CGGg -3'
miRNA:   3'- -UUGCGCUC--------UGCU--AGCCGUU-----AGuGCCg -5'
26130 3' -53.9 NC_005342.2 + 17533 0.66 0.741738
Target:  5'- cAGCGUGAGcGCGG-CGGCcuUCGCGuuGCg -3'
miRNA:   3'- -UUGCGCUC-UGCUaGCCGuuAGUGC--CG- -5'
26130 3' -53.9 NC_005342.2 + 13272 0.66 0.741738
Target:  5'- cGACGUGguGGAUGAUCGGCAccgaaGUcCACGcgacGCg -3'
miRNA:   3'- -UUGCGC--UCUGCUAGCCGU-----UA-GUGC----CG- -5'
26130 3' -53.9 NC_005342.2 + 15062 0.66 0.741738
Target:  5'- gGugGCGAGuuucGCGGcgUCGGCGu---CGGCg -3'
miRNA:   3'- -UugCGCUC----UGCU--AGCCGUuaguGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.