miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26131 5' -66 NC_005342.2 + 8516 0.66 0.252216
Target:  5'- uCGCCGUCgCGagguacgaaaaUCCUGugggacgugGugGCCGGGCa -3'
miRNA:   3'- -GCGGCGG-GC-----------GGGGCua-------CugCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 39873 0.66 0.252216
Target:  5'- gCGUCGUCCaCUCCGAUGcggaaGCaUGGGCg -3'
miRNA:   3'- -GCGGCGGGcGGGGCUACug---CG-GCCCG- -5'
26131 5' -66 NC_005342.2 + 26153 0.66 0.25161
Target:  5'- aGUCGCCUGCCcgaauCCGGaaGCGCCGccgcugcGGCg -3'
miRNA:   3'- gCGGCGGGCGG-----GGCUacUGCGGC-------CCG- -5'
26131 5' -66 NC_005342.2 + 4054 0.66 0.25161
Target:  5'- aCGCCGCaaagucgCCGCCCU--UGcCGagCGGGCg -3'
miRNA:   3'- -GCGGCG-------GGCGGGGcuACuGCg-GCCCG- -5'
26131 5' -66 NC_005342.2 + 37863 0.66 0.246216
Target:  5'- aCGCCGaCCCgGCCgCCGAucuUGgcACGCCGcucgcaauGGCc -3'
miRNA:   3'- -GCGGC-GGG-CGG-GGCU---AC--UGCGGC--------CCG- -5'
26131 5' -66 NC_005342.2 + 33152 0.66 0.246216
Target:  5'- aGCCGCgaGUCCgGcagcauUGgcagcggcGCGCCGGGCg -3'
miRNA:   3'- gCGGCGggCGGGgCu-----AC--------UGCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 22203 0.66 0.246216
Target:  5'- uGCgGCCUG-CUCGAUGcCGagaCGGGCc -3'
miRNA:   3'- gCGgCGGGCgGGGCUACuGCg--GCCCG- -5'
26131 5' -66 NC_005342.2 + 29864 0.66 0.240336
Target:  5'- gGCCG-CCGCCUuuCGuguUGuACGCCgaGGGCa -3'
miRNA:   3'- gCGGCgGGCGGG--GCu--AC-UGCGG--CCCG- -5'
26131 5' -66 NC_005342.2 + 37943 0.66 0.240336
Target:  5'- aGCgGCgUGCCaaGAUcGGCgGCCGGGUc -3'
miRNA:   3'- gCGgCGgGCGGggCUA-CUG-CGGCCCG- -5'
26131 5' -66 NC_005342.2 + 16614 0.66 0.240336
Target:  5'- aGuuGUCCggcauGCCUuucgacagcgUGAcgGACGCCGGGCa -3'
miRNA:   3'- gCggCGGG-----CGGG----------GCUa-CUGCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 8120 0.66 0.239754
Target:  5'- gGCgGUuaucgacaucucgUCGCCCCGAUGAaggcCGCCGaGCu -3'
miRNA:   3'- gCGgCG-------------GGCGGGGCUACU----GCGGCcCG- -5'
26131 5' -66 NC_005342.2 + 20550 0.66 0.234573
Target:  5'- gGCCGCgCCGCUgaUCGucgGcGCGUCGGGUc -3'
miRNA:   3'- gCGGCG-GGCGG--GGCua-C-UGCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 38888 0.66 0.223396
Target:  5'- uGCCGCCCGUgCUGcgcGCGCUGcaccGGCa -3'
miRNA:   3'- gCGGCGGGCGgGGCuacUGCGGC----CCG- -5'
26131 5' -66 NC_005342.2 + 41608 0.66 0.223396
Target:  5'- uCGCgGCCgGgCgCCGucGUGcCGUCGGGCa -3'
miRNA:   3'- -GCGgCGGgCgG-GGC--UACuGCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 38403 0.66 0.222849
Target:  5'- gGCCGCCgCGCugaaauuCCCGcaGcCGCCGGcGCu -3'
miRNA:   3'- gCGGCGG-GCG-------GGGCuaCuGCGGCC-CG- -5'
26131 5' -66 NC_005342.2 + 8191 0.66 0.217979
Target:  5'- aCGCUGCgUGgCagGAUGACGCCGGcccGCg -3'
miRNA:   3'- -GCGGCGgGCgGggCUACUGCGGCC---CG- -5'
26131 5' -66 NC_005342.2 + 22939 0.66 0.217979
Target:  5'- gCGCCaGUacgaUCGCgCCGAU--CGCCGGGCc -3'
miRNA:   3'- -GCGG-CG----GGCGgGGCUAcuGCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 7318 0.66 0.217979
Target:  5'- uCGCCGUCgCGCa--GAUGAucggcgucuaauCGUCGGGCg -3'
miRNA:   3'- -GCGGCGG-GCGgggCUACU------------GCGGCCCG- -5'
26131 5' -66 NC_005342.2 + 45294 0.66 0.217979
Target:  5'- gCGCCccGCCCGCCaguuguagaCGAucucgcUGACcuGCuCGGGCg -3'
miRNA:   3'- -GCGG--CGGGCGGg--------GCU------ACUG--CG-GCCCG- -5'
26131 5' -66 NC_005342.2 + 14294 0.67 0.212675
Target:  5'- cCGCCGCUCGgCUCGAaagaGGCGCgCGcGCa -3'
miRNA:   3'- -GCGGCGGGCgGGGCUa---CUGCG-GCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.