miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26136 5' -60.9 NC_005342.2 + 33214 0.66 0.4304
Target:  5'- uGCCGGacucGCGGCUacgguucGGCGCGcAGUcGCc -3'
miRNA:   3'- cCGGCCgc--UGCCGAa------CCGCGC-UCA-CG- -5'
26136 5' -60.9 NC_005342.2 + 13121 0.66 0.4304
Target:  5'- uGCCGGCGAacgaauacguCGGCUugagcaUgucgccgaccgGGCGCGAuacgaucguGUGCa -3'
miRNA:   3'- cCGGCCGCU----------GCCGA------A-----------CCGCGCU---------CACG- -5'
26136 5' -60.9 NC_005342.2 + 1343 0.66 0.427623
Target:  5'- uGCCGGCGGCGGcCUUGaacgaacgcaugaaGCcGCGcuUGUa -3'
miRNA:   3'- cCGGCCGCUGCC-GAAC--------------CG-CGCucACG- -5'
26136 5' -60.9 NC_005342.2 + 47929 0.66 0.421186
Target:  5'- uGCCGGCG-CGGUgc-GCGCGcccGGUuGCc -3'
miRNA:   3'- cCGGCCGCuGCCGaacCGCGC---UCA-CG- -5'
26136 5' -60.9 NC_005342.2 + 5682 0.66 0.421186
Target:  5'- -aCCGGUaACGGCaUGGUGCGcGUuGCc -3'
miRNA:   3'- ccGGCCGcUGCCGaACCGCGCuCA-CG- -5'
26136 5' -60.9 NC_005342.2 + 1986 0.66 0.421186
Target:  5'- cGGCCGGUGucgcCGGUgcgGGCcaaCuAGUGCa -3'
miRNA:   3'- -CCGGCCGCu---GCCGaa-CCGc--GcUCACG- -5'
26136 5' -60.9 NC_005342.2 + 41810 0.66 0.421186
Target:  5'- uGCUGcGCGACgaGGCgUGuCGCGAGgUGCg -3'
miRNA:   3'- cCGGC-CGCUG--CCGaACcGCGCUC-ACG- -5'
26136 5' -60.9 NC_005342.2 + 25110 0.66 0.421186
Target:  5'- gGGCaCGGCGAgcaCGGC--GGCGCGcacGUucGCg -3'
miRNA:   3'- -CCG-GCCGCU---GCCGaaCCGCGCu--CA--CG- -5'
26136 5' -60.9 NC_005342.2 + 18858 0.66 0.418446
Target:  5'- cGGCCGcGCGauaagcGCGGUUcagcgaUGGCGgGAaggggagccgcaacGUGCg -3'
miRNA:   3'- -CCGGC-CGC------UGCCGA------ACCGCgCU--------------CACG- -5'
26136 5' -60.9 NC_005342.2 + 11198 0.66 0.412093
Target:  5'- -uCgGGCG-CGGCUccuugccGGCGCucGAGUGCu -3'
miRNA:   3'- ccGgCCGCuGCCGAa------CCGCG--CUCACG- -5'
26136 5' -60.9 NC_005342.2 + 11684 0.66 0.403123
Target:  5'- cGCCgGGCGGCGuGC-UGGCGUcc-UGCg -3'
miRNA:   3'- cCGG-CCGCUGC-CGaACCGCGcucACG- -5'
26136 5' -60.9 NC_005342.2 + 25364 0.66 0.403123
Target:  5'- cGCCGGCGuCGGCccGGuUGCGAc-GCc -3'
miRNA:   3'- cCGGCCGCuGCCGaaCC-GCGCUcaCG- -5'
26136 5' -60.9 NC_005342.2 + 46132 0.66 0.403123
Target:  5'- gGGCUGGauCGaAUGGaagGGCGgCGAGUGUc -3'
miRNA:   3'- -CCGGCC--GC-UGCCgaaCCGC-GCUCACG- -5'
26136 5' -60.9 NC_005342.2 + 130 0.66 0.403123
Target:  5'- cGGCgCGaGCacacGAuCGGCgccUGGCGCGAGUcCa -3'
miRNA:   3'- -CCG-GC-CG----CU-GCCGa--ACCGCGCUCAcG- -5'
26136 5' -60.9 NC_005342.2 + 41323 0.66 0.3978
Target:  5'- cGGCCcacGCGcucgcucgugcucugGCGGCagauugucgGGCGCGGGcUGCg -3'
miRNA:   3'- -CCGGc--CGC---------------UGCCGaa-------CCGCGCUC-ACG- -5'
26136 5' -60.9 NC_005342.2 + 31066 0.66 0.394277
Target:  5'- cGGCCGGUucGcCGGCaUGGUGCu--UGCa -3'
miRNA:   3'- -CCGGCCG--CuGCCGaACCGCGcucACG- -5'
26136 5' -60.9 NC_005342.2 + 21011 0.66 0.394277
Target:  5'- aGCCgucacgGGCGACGaagUGGcCGCGcAGUGCu -3'
miRNA:   3'- cCGG------CCGCUGCcgaACC-GCGC-UCACG- -5'
26136 5' -60.9 NC_005342.2 + 47223 0.66 0.394277
Target:  5'- cGCCGGCGGCGacugccgcGCUgaacgaGGCGCcGGccgGCg -3'
miRNA:   3'- cCGGCCGCUGC--------CGAa-----CCGCGcUCa--CG- -5'
26136 5' -60.9 NC_005342.2 + 42746 0.66 0.394277
Target:  5'- cGCCGGCGAg-----GGUGCGGGUuGCa -3'
miRNA:   3'- cCGGCCGCUgccgaaCCGCGCUCA-CG- -5'
26136 5' -60.9 NC_005342.2 + 29530 0.66 0.385557
Target:  5'- gGGCCGuuGAUGGCgaucGGCGCGcc-GCc -3'
miRNA:   3'- -CCGGCcgCUGCCGaa--CCGCGCucaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.