miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26137 5' -51.5 NC_005342.2 + 39592 0.66 0.891371
Target:  5'- gGGUAUGCgcgUUCGGACGgccacAGCGCGAGc -3'
miRNA:   3'- -CCAUGCG---GGGCUUGCaa---UCGUGUUCa -5'
26137 5' -51.5 NC_005342.2 + 33402 0.66 0.88378
Target:  5'- --gACGCCCCcuGCGguagaUGGUACAAGc -3'
miRNA:   3'- ccaUGCGGGGcuUGCa----AUCGUGUUCa -5'
26137 5' -51.5 NC_005342.2 + 41653 0.66 0.88378
Target:  5'- gGGUGCGgcuaCCUGAACGacgcugAGCACAu-- -3'
miRNA:   3'- -CCAUGCg---GGGCUUGCaa----UCGUGUuca -5'
26137 5' -51.5 NC_005342.2 + 2981 0.66 0.88378
Target:  5'- cGGcGCGuCCgCCGGACG-UAGCGCGc-- -3'
miRNA:   3'- -CCaUGC-GG-GGCUUGCaAUCGUGUuca -5'
26137 5' -51.5 NC_005342.2 + 622 0.66 0.875913
Target:  5'- --gACGCCCgUGAACGUgaaaCGCAAGg -3'
miRNA:   3'- ccaUGCGGG-GCUUGCAauc-GUGUUCa -5'
26137 5' -51.5 NC_005342.2 + 46532 0.66 0.871064
Target:  5'- cGUGCGCaacaCGAACGUgcucggcaucgaacGGCACAAGc -3'
miRNA:   3'- cCAUGCGgg--GCUUGCAa-------------UCGUGUUCa -5'
26137 5' -51.5 NC_005342.2 + 20232 0.66 0.867779
Target:  5'- uGUGCG-CCCGAGcCGgcGGC-CGAGUa -3'
miRNA:   3'- cCAUGCgGGGCUU-GCaaUCGuGUUCA- -5'
26137 5' -51.5 NC_005342.2 + 5506 0.66 0.867779
Target:  5'- aGGUcAUGCCguggCCGGcgACGgcuUGGCGCGAGUg -3'
miRNA:   3'- -CCA-UGCGG----GGCU--UGCa--AUCGUGUUCA- -5'
26137 5' -51.5 NC_005342.2 + 41035 0.66 0.859383
Target:  5'- cGGcGCGCgaUGGACGUgacGCGCGAGUg -3'
miRNA:   3'- -CCaUGCGggGCUUGCAau-CGUGUUCA- -5'
26137 5' -51.5 NC_005342.2 + 33136 0.66 0.850733
Target:  5'- -cUGCGCgCCGAACcgUAGcCGCGAGUc -3'
miRNA:   3'- ccAUGCGgGGCUUGcaAUC-GUGUUCA- -5'
26137 5' -51.5 NC_005342.2 + 43299 0.66 0.850733
Target:  5'- ---uCGCCUCGAACGcgaguGCGCGAGc -3'
miRNA:   3'- ccauGCGGGGCUUGCaau--CGUGUUCa -5'
26137 5' -51.5 NC_005342.2 + 36889 0.66 0.850733
Target:  5'- --cACGCCCCGcagcugcccGACGUccucgaUAGCGCGAa- -3'
miRNA:   3'- ccaUGCGGGGC---------UUGCA------AUCGUGUUca -5'
26137 5' -51.5 NC_005342.2 + 21249 0.67 0.83271
Target:  5'- --aAUGCCCCGAgcaggccggccuGCGgcAGCGCGAa- -3'
miRNA:   3'- ccaUGCGGGGCU------------UGCaaUCGUGUUca -5'
26137 5' -51.5 NC_005342.2 + 20989 0.67 0.813787
Target:  5'- gGGUGCGUUUCGAGCGcgUGGCAg---- -3'
miRNA:   3'- -CCAUGCGGGGCUUGCa-AUCGUguuca -5'
26137 5' -51.5 NC_005342.2 + 747 0.67 0.804015
Target:  5'- --gGCGCUCgCGGGCGgcGGCACGAu- -3'
miRNA:   3'- ccaUGCGGG-GCUUGCaaUCGUGUUca -5'
26137 5' -51.5 NC_005342.2 + 8289 0.67 0.804015
Target:  5'- gGGgcucGCGCCCCGcuauGCGUUAcGCGCccGUa -3'
miRNA:   3'- -CCa---UGCGGGGCu---UGCAAU-CGUGuuCA- -5'
26137 5' -51.5 NC_005342.2 + 11259 0.67 0.804015
Target:  5'- aGGagcCGCgCCCGAaucACGUgcGCGCGGGUc -3'
miRNA:   3'- -CCau-GCG-GGGCU---UGCAauCGUGUUCA- -5'
26137 5' -51.5 NC_005342.2 + 18490 0.67 0.803027
Target:  5'- cGGUgucgACGCCgCCGAucgcgagGCGUUgcgcuucggacGGCACGAGc -3'
miRNA:   3'- -CCA----UGCGG-GGCU-------UGCAA-----------UCGUGUUCa -5'
26137 5' -51.5 NC_005342.2 + 31096 0.68 0.794051
Target:  5'- cGG-GCGCCgUGcucGGCGUcGGCGCAGGUg -3'
miRNA:   3'- -CCaUGCGGgGC---UUGCAaUCGUGUUCA- -5'
26137 5' -51.5 NC_005342.2 + 18537 0.68 0.794051
Target:  5'- gGGUACGCCuCCGGugcCGgguuGCGCGAa- -3'
miRNA:   3'- -CCAUGCGG-GGCUu--GCaau-CGUGUUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.