miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26138 3' -51.4 NC_005342.2 + 21195 0.66 0.887871
Target:  5'- uGC-GCGcGCUC-GUUCaGGGCGCuCGCGa -3'
miRNA:   3'- -CGuUGCaCGAGuUAAG-CUCGCG-GUGC- -5'
26138 3' -51.4 NC_005342.2 + 11177 0.66 0.887871
Target:  5'- cGCGACccGCgcgCAcgugAUUCGGGCGCgGCu -3'
miRNA:   3'- -CGUUGcaCGa--GU----UAAGCUCGCGgUGc -5'
26138 3' -51.4 NC_005342.2 + 35882 0.66 0.880134
Target:  5'- uGCGuACGUgGCUgGcg-CGcAGCGCCGCGu -3'
miRNA:   3'- -CGU-UGCA-CGAgUuaaGC-UCGCGGUGC- -5'
26138 3' -51.4 NC_005342.2 + 4164 0.66 0.880134
Target:  5'- aGCGGCGUGUgc--UUCu-GCGCCugGa -3'
miRNA:   3'- -CGUUGCACGaguuAAGcuCGCGGugC- -5'
26138 3' -51.4 NC_005342.2 + 6904 0.66 0.872124
Target:  5'- -aGGCGUGCg-----CGGGCGCCAg- -3'
miRNA:   3'- cgUUGCACGaguuaaGCUCGCGGUgc -5'
26138 3' -51.4 NC_005342.2 + 9995 0.66 0.872124
Target:  5'- cGCGACGUGCUUGAUcaugagGGGCaGCCccuCGa -3'
miRNA:   3'- -CGUUGCACGAGUUAag----CUCG-CGGu--GC- -5'
26138 3' -51.4 NC_005342.2 + 45618 0.66 0.863847
Target:  5'- -aGGCGcUGCUCGAggugcuugcCGAGCugGCCGCGu -3'
miRNA:   3'- cgUUGC-ACGAGUUaa-------GCUCG--CGGUGC- -5'
26138 3' -51.4 NC_005342.2 + 32018 0.66 0.863847
Target:  5'- uCGACGUGCgucagcaggUCGGUcaCGAGCGCgugCACGg -3'
miRNA:   3'- cGUUGCACG---------AGUUAa-GCUCGCG---GUGC- -5'
26138 3' -51.4 NC_005342.2 + 27522 0.66 0.863847
Target:  5'- uCGACGUG-UCGA-UCGcaAGUGCCGCGc -3'
miRNA:   3'- cGUUGCACgAGUUaAGC--UCGCGGUGC- -5'
26138 3' -51.4 NC_005342.2 + 43744 0.66 0.863005
Target:  5'- cUAACG-GCUCGAUaaacuaaUCGGGCcGCUACu -3'
miRNA:   3'- cGUUGCaCGAGUUA-------AGCUCG-CGGUGc -5'
26138 3' -51.4 NC_005342.2 + 37055 0.66 0.855311
Target:  5'- uCGACGUcgUCGGaaaGAGCGCCGCGc -3'
miRNA:   3'- cGUUGCAcgAGUUaagCUCGCGGUGC- -5'
26138 3' -51.4 NC_005342.2 + 37118 0.66 0.855311
Target:  5'- gGCGACGca---GAUUCGAGCGCguCGa -3'
miRNA:   3'- -CGUUGCacgagUUAAGCUCGCGguGC- -5'
26138 3' -51.4 NC_005342.2 + 37272 0.67 0.850069
Target:  5'- gGCGGCccauUGCUCGAUcugcaugcguuuggCGAGCGCCGg- -3'
miRNA:   3'- -CGUUGc---ACGAGUUAa-------------GCUCGCGGUgc -5'
26138 3' -51.4 NC_005342.2 + 9433 0.67 0.846525
Target:  5'- --uGCGcGC-CAAgugCGGGCGCCGCa -3'
miRNA:   3'- cguUGCaCGaGUUaa-GCUCGCGGUGc -5'
26138 3' -51.4 NC_005342.2 + 38248 0.67 0.837498
Target:  5'- gGCAGCGcaaUCAucgCGucGCGCCACGg -3'
miRNA:   3'- -CGUUGCacgAGUuaaGCu-CGCGGUGC- -5'
26138 3' -51.4 NC_005342.2 + 28119 0.67 0.828239
Target:  5'- gGCAagACGUGCUCAcgccgaucaCGAGCGaUACGa -3'
miRNA:   3'- -CGU--UGCACGAGUuaa------GCUCGCgGUGC- -5'
26138 3' -51.4 NC_005342.2 + 35209 0.67 0.81876
Target:  5'- -gAGCGUGC-CGccugCGAGCGgCACGu -3'
miRNA:   3'- cgUUGCACGaGUuaa-GCUCGCgGUGC- -5'
26138 3' -51.4 NC_005342.2 + 37207 0.67 0.81876
Target:  5'- cGCAguacACGUGCacgccgcgCAAaccgCGAGCGCCgACGu -3'
miRNA:   3'- -CGU----UGCACGa-------GUUaa--GCUCGCGG-UGC- -5'
26138 3' -51.4 NC_005342.2 + 31989 0.67 0.81876
Target:  5'- gGCGACGUGCUCAucgCGcuCGUCGu- -3'
miRNA:   3'- -CGUUGCACGAGUuaaGCucGCGGUgc -5'
26138 3' -51.4 NC_005342.2 + 8387 0.67 0.81876
Target:  5'- aGCAACGUcGC-CGAUaCG-GUGCCGCc -3'
miRNA:   3'- -CGUUGCA-CGaGUUAaGCuCGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.