miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26139 5' -55.2 NC_005342.2 + 31449 0.66 0.656902
Target:  5'- gGCGgaUGCGaagucCGGCCcgAUCGAGCaGAUCg -3'
miRNA:   3'- aCGUa-ACGC-----GUCGG--UAGCUCGcCUAG- -5'
26139 5' -55.2 NC_005342.2 + 6897 0.66 0.656902
Target:  5'- aUGCAgUGCGCAGCCGcCGguAGCcGAc- -3'
miRNA:   3'- -ACGUaACGCGUCGGUaGC--UCGcCUag -5'
26139 5' -55.2 NC_005342.2 + 21769 0.66 0.645615
Target:  5'- cGCAcgUGCGCauagAGCgCGUCGAGCuGcUCg -3'
miRNA:   3'- aCGUa-ACGCG----UCG-GUAGCUCGcCuAG- -5'
26139 5' -55.2 NC_005342.2 + 23806 0.66 0.645615
Target:  5'- uUGguUUGUGCGGUCAugUCGAucgccucacGCGGAa- -3'
miRNA:   3'- -ACguAACGCGUCGGU--AGCU---------CGCCUag -5'
26139 5' -55.2 NC_005342.2 + 13333 0.66 0.645615
Target:  5'- gUGUAcggGCGCGGCa--CGAGCGGcgUg -3'
miRNA:   3'- -ACGUaa-CGCGUCGguaGCUCGCCuaG- -5'
26139 5' -55.2 NC_005342.2 + 35668 0.66 0.634316
Target:  5'- cGCGaucUGCGCauucaAGCCGUCGAGCa---- -3'
miRNA:   3'- aCGUa--ACGCG-----UCGGUAGCUCGccuag -5'
26139 5' -55.2 NC_005342.2 + 29213 0.66 0.634316
Target:  5'- cGCAcggacUUGgGCGGCCAUCugcuuAGCGGccgcAUCg -3'
miRNA:   3'- aCGU-----AACgCGUCGGUAGc----UCGCC----UAG- -5'
26139 5' -55.2 NC_005342.2 + 34288 0.66 0.634316
Target:  5'- gGUAUUGCGCGGUaaccagauuUAUUGuGGCGGcgCg -3'
miRNA:   3'- aCGUAACGCGUCG---------GUAGC-UCGCCuaG- -5'
26139 5' -55.2 NC_005342.2 + 14274 0.66 0.623015
Target:  5'- gGCGcgcGCGCAcGCCGUCGcaUGGGUCu -3'
miRNA:   3'- aCGUaa-CGCGU-CGGUAGCucGCCUAG- -5'
26139 5' -55.2 NC_005342.2 + 28625 0.66 0.611722
Target:  5'- cGCAggccgGCGCGuacuuGCCGUCGgugcgcAGCGGcgCg -3'
miRNA:   3'- aCGUaa---CGCGU-----CGGUAGC------UCGCCuaG- -5'
26139 5' -55.2 NC_005342.2 + 19828 0.66 0.610593
Target:  5'- gUGCGUUGgaGCGGCCgAUCGcgucguugacggcAGCGGcgCc -3'
miRNA:   3'- -ACGUAACg-CGUCGG-UAGC-------------UCGCCuaG- -5'
26139 5' -55.2 NC_005342.2 + 16707 0.67 0.600448
Target:  5'- cGCGcgGUGCAGCac-CGGGCaGGUCg -3'
miRNA:   3'- aCGUaaCGCGUCGguaGCUCGcCUAG- -5'
26139 5' -55.2 NC_005342.2 + 29069 0.67 0.58808
Target:  5'- aGCc--GCGCGGCUGcuuaacacgcaccUCGAGCGGcUCg -3'
miRNA:   3'- aCGuaaCGCGUCGGU-------------AGCUCGCCuAG- -5'
26139 5' -55.2 NC_005342.2 + 37969 0.67 0.577995
Target:  5'- cGCAgaGCuucucgGCGGCCAUugCGAGCGGcgUg -3'
miRNA:   3'- aCGUaaCG------CGUCGGUA--GCUCGCCuaG- -5'
26139 5' -55.2 NC_005342.2 + 9205 0.67 0.577995
Target:  5'- cGCAagcGCGCAGCUgcgGUCGAGCaGGc- -3'
miRNA:   3'- aCGUaa-CGCGUCGG---UAGCUCGcCUag -5'
26139 5' -55.2 NC_005342.2 + 25632 0.67 0.574641
Target:  5'- cGCuguUUGCGCAGCUgaucgccaaugucgAcccgcugacaUCGAGCGGcgCg -3'
miRNA:   3'- aCGu--AACGCGUCGG--------------U----------AGCUCGCCuaG- -5'
26139 5' -55.2 NC_005342.2 + 38960 0.67 0.555729
Target:  5'- gUGCAgcgcGCGCAGCa--CGGGCGGcaggauGUCg -3'
miRNA:   3'- -ACGUaa--CGCGUCGguaGCUCGCC------UAG- -5'
26139 5' -55.2 NC_005342.2 + 44956 0.67 0.544689
Target:  5'- cGCAUcagcaaGCGCGGCCAguaUCGGGCcGAcuUCg -3'
miRNA:   3'- aCGUAa-----CGCGUCGGU---AGCUCGcCU--AG- -5'
26139 5' -55.2 NC_005342.2 + 20963 0.68 0.53372
Target:  5'- cGCAaacgcGCGCGGCgCGggCGAGUGGGUg -3'
miRNA:   3'- aCGUaa---CGCGUCG-GUa-GCUCGCCUAg -5'
26139 5' -55.2 NC_005342.2 + 44823 0.68 0.532628
Target:  5'- aGCGUcUGCGCGccGCCAgcgccacgcgcggUCGAGCGGc-- -3'
miRNA:   3'- aCGUA-ACGCGU--CGGU-------------AGCUCGCCuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.