Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2614 | 3' | -52.4 | NC_001488.1 | + | 380 | 0.67 | 0.276077 |
Target: 5'- gAGGa-UGGAUcCCCAAGGugAGucuccguGACCa -3' miRNA: 3'- -UCCgcACCUGuGGGUUCCugUU-------UUGG- -5' |
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2614 | 3' | -52.4 | NC_001488.1 | + | 1820 | 1.13 | 0.000071 |
Target: 5'- cAGGCGUGGACACCCAAGGACAAAACCa -3' miRNA: 3'- -UCCGCACCUGUGGGUUCCUGUUUUGG- -5' |
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2614 | 3' | -52.4 | NC_001488.1 | + | 3625 | 0.71 | 0.144046 |
Target: 5'- cAGGCcaGUaGGugAcCCCAAGGACAuAAACUg -3' miRNA: 3'- -UCCG--CA-CCugU-GGGUUCCUGU-UUUGG- -5' |
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2614 | 3' | -52.4 | NC_001488.1 | + | 4158 | 0.7 | 0.169113 |
Target: 5'- cAGGCGgccuuGcCACCCcuacugcAGGGCAAGACCa -3' miRNA: 3'- -UCCGCac---CuGUGGGu------UCCUGUUUUGG- -5' |
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2614 | 3' | -52.4 | NC_001488.1 | + | 4327 | 0.7 | 0.171279 |
Target: 5'- gAGGcCGUGGAgGCCUuGGGGCGucaggggaacaagggGAGCUa -3' miRNA: 3'- -UCC-GCACCUgUGGGuUCCUGU---------------UUUGG- -5' |
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2614 | 3' | -52.4 | NC_001488.1 | + | 4372 | 0.66 | 0.339089 |
Target: 5'- uGGUGUGG-CGCCaaAAGaGACuAGAGCCc -3' miRNA: 3'- uCCGCACCuGUGGg-UUC-CUG-UUUUGG- -5' |
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2614 | 3' | -52.4 | NC_001488.1 | + | 8561 | 0.67 | 0.276077 |
Target: 5'- gAGGa-UGGAUcCCCAAGGugAGucuccguGACCa -3' miRNA: 3'- -UCCgcACCUGuGGGUUCCugUU-------UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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